Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lexA and JDDGAC_29385 are separated by 97 nucleotides JDDGAC_29385 and JDDGAC_29390 overlap by 4 nucleotides JDDGAC_29390 and eCs1768 are separated by 68 nucleotides eCs1768 and JDDGAC_29400 are separated by 31 nucleotides JDDGAC_29400 and JDDGAC_29405 are separated by 34 nucleotides
JDDGAC_29380: lexA - XRE family transcriptional regulator, at 5,609,796 to 5,610,440
lexA
JDDGAC_29385: JDDGAC_29385 - cell division protein, at 5,610,538 to 5,610,765
_29385
JDDGAC_29390: JDDGAC_29390 - Rha family transcriptional regulator, at 5,610,762 to 5,611,187
_29390
JDDGAC_29395: eCs1768 - phage replisome organizer, at 5,611,256 to 5,612,293
eCs1768
JDDGAC_29400: JDDGAC_29400 - replication protein, at 5,612,325 to 5,612,747
_29400
JDDGAC_29405: JDDGAC_29405 - DUF1627 domain-containing protein, at 5,612,782 to 5,613,480
_29405
Position (kb) 5611
5612
5613 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5610.620 kb on - strand, within JDDGAC_29385 at 5610.620 kb on - strand, within JDDGAC_29385 at 5610.631 kb on - strand, within JDDGAC_29385 at 5610.683 kb on - strand, within JDDGAC_29385 at 5610.683 kb on - strand, within JDDGAC_29385 at 5610.733 kb on - strand, within JDDGAC_29385 at 5610.733 kb on - strand, within JDDGAC_29385 at 5611.750 kb on + strand, within eCs1768 at 5612.715 kb on + strand at 5612.716 kb on - strand at 5612.716 kb on - strand at 5612.874 kb on + strand, within JDDGAC_29405 at 5612.913 kb on + strand, within JDDGAC_29405 at 5613.048 kb on + strand, within JDDGAC_29405 at 5613.048 kb on + strand, within JDDGAC_29405 at 5613.123 kb on + strand, within JDDGAC_29405 at 5613.124 kb on - strand, within JDDGAC_29405 at 5613.124 kb on - strand, within JDDGAC_29405
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 5,610,620 - JDDGAC_29385 0.36 -0.1 5,610,620 - JDDGAC_29385 0.36 +0.7 5,610,631 - JDDGAC_29385 0.41 -0.0 5,610,683 - JDDGAC_29385 0.64 +0.3 5,610,683 - JDDGAC_29385 0.64 +0.2 5,610,733 - JDDGAC_29385 0.86 +0.0 5,610,733 - JDDGAC_29385 0.86 -0.1 5,611,750 + eCs1768 JDDGAC_29395 0.48 -1.8 5,612,715 + +0.9 5,612,716 - +1.3 5,612,716 - +2.8 5,612,874 + JDDGAC_29405 0.13 -0.9 5,612,913 + JDDGAC_29405 0.19 +0.0 5,613,048 + JDDGAC_29405 0.38 +0.4 5,613,048 + JDDGAC_29405 0.38 +0.3 5,613,123 + JDDGAC_29405 0.49 +0.5 5,613,124 - JDDGAC_29405 0.49 -0.7 5,613,124 - JDDGAC_29405 0.49 +0.8
Or see this region's nucleotide sequence