Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfeR and JDDGAC_26185 overlap by 10 nucleotides JDDGAC_26185 and Lys_trna are separated by 119 nucleotides Lys_trna and Val_trna are separated by 4 nucleotides Val_trna and Val_trna are separated by 44 nucleotides Val_trna and gltX are separated by 258 nucleotides
JDDGAC_26180: yfeR - Uncharacterized HTH-type transcriptional regulator YfeR, at 5,008,612 to 5,009,538
yfeR
JDDGAC_26185: JDDGAC_26185 - flxA-like family protein, at 5,009,529 to 5,009,870
_26185
JDDGAC_26190: Lys_trna - tRNA-Lys(ttt), at 5,009,990 to 5,010,065
_trna
JDDGAC_26195: Val_trna - tRNA-Val(tac), at 5,010,070 to 5,010,145
_trna
JDDGAC_26200: Val_trna - tRNA-Val(tac), at 5,010,190 to 5,010,265
_trna
JDDGAC_26205: gltX - glutamate--tRNA ligase, at 5,010,524 to 5,011,939
gltX
Position (kb)
5009
5010 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5008.619 kb on - strand at 5008.619 kb on - strand at 5008.625 kb on + strand at 5008.653 kb on - strand at 5008.690 kb on - strand at 5008.843 kb on - strand, within yfeR at 5008.843 kb on - strand, within yfeR at 5008.933 kb on - strand, within yfeR at 5009.155 kb on + strand, within yfeR at 5009.155 kb on + strand, within yfeR at 5009.156 kb on - strand, within yfeR at 5009.156 kb on - strand, within yfeR at 5009.156 kb on - strand, within yfeR at 5009.156 kb on - strand, within yfeR at 5009.156 kb on - strand, within yfeR at 5009.159 kb on + strand, within yfeR at 5009.159 kb on + strand, within yfeR at 5009.203 kb on + strand, within yfeR at 5009.253 kb on + strand, within yfeR at 5009.368 kb on - strand, within yfeR at 5009.391 kb on + strand, within yfeR at 5009.466 kb on - strand at 5009.493 kb on + strand at 5009.534 kb on + strand at 5009.535 kb on - strand at 5009.536 kb on + strand at 5009.536 kb on + strand at 5009.536 kb on + strand at 5009.537 kb on - strand at 5009.537 kb on - strand at 5009.537 kb on - strand at 5009.537 kb on - strand at 5009.537 kb on - strand at 5009.537 kb on - strand at 5009.727 kb on + strand, within JDDGAC_26185 at 5009.727 kb on + strand, within JDDGAC_26185 at 5009.727 kb on + strand, within JDDGAC_26185 at 5009.728 kb on - strand, within JDDGAC_26185 at 5009.728 kb on - strand, within JDDGAC_26185 at 5009.822 kb on + strand, within JDDGAC_26185 at 5009.823 kb on - strand, within JDDGAC_26185 at 5009.891 kb on - strand at 5009.986 kb on - strand at 5010.178 kb on - strand at 5010.178 kb on - strand at 5010.182 kb on - strand at 5010.182 kb on - strand at 5010.187 kb on - strand at 5010.187 kb on - strand at 5010.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 5,008,619 - +0.1 5,008,619 - +0.4 5,008,625 + +0.8 5,008,653 - -0.3 5,008,690 - +0.2 5,008,843 - yfeR JDDGAC_26180 0.25 -0.4 5,008,843 - yfeR JDDGAC_26180 0.25 +0.4 5,008,933 - yfeR JDDGAC_26180 0.35 +0.1 5,009,155 + yfeR JDDGAC_26180 0.59 -0.5 5,009,155 + yfeR JDDGAC_26180 0.59 +0.1 5,009,156 - yfeR JDDGAC_26180 0.59 -0.6 5,009,156 - yfeR JDDGAC_26180 0.59 +0.3 5,009,156 - yfeR JDDGAC_26180 0.59 +1.4 5,009,156 - yfeR JDDGAC_26180 0.59 -3.0 5,009,156 - yfeR JDDGAC_26180 0.59 +0.4 5,009,159 + yfeR JDDGAC_26180 0.59 -1.2 5,009,159 + yfeR JDDGAC_26180 0.59 +0.4 5,009,203 + yfeR JDDGAC_26180 0.64 +1.5 5,009,253 + yfeR JDDGAC_26180 0.69 -0.7 5,009,368 - yfeR JDDGAC_26180 0.82 -1.1 5,009,391 + yfeR JDDGAC_26180 0.84 -0.0 5,009,466 - -0.5 5,009,493 + +0.8 5,009,534 + -0.5 5,009,535 - -0.1 5,009,536 + -0.7 5,009,536 + -0.2 5,009,536 + +0.0 5,009,537 - +0.1 5,009,537 - +0.2 5,009,537 - +1.5 5,009,537 - +0.1 5,009,537 - -0.5 5,009,537 - +0.2 5,009,727 + JDDGAC_26185 0.58 -1.6 5,009,727 + JDDGAC_26185 0.58 -1.8 5,009,727 + JDDGAC_26185 0.58 -0.7 5,009,728 - JDDGAC_26185 0.58 -1.5 5,009,728 - JDDGAC_26185 0.58 -0.7 5,009,822 + JDDGAC_26185 0.86 +1.1 5,009,823 - JDDGAC_26185 0.86 +0.7 5,009,891 - +0.2 5,009,986 - +0.4 5,010,178 - +0.4 5,010,178 - -0.6 5,010,182 - -0.9 5,010,182 - -1.9 5,010,187 - +0.2 5,010,187 - +0.2 5,010,428 - +1.3
Or see this region's nucleotide sequence