Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26185

Experiment: WM_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfeR and JDDGAC_26185 overlap by 10 nucleotidesJDDGAC_26185 and Lys_trna are separated by 119 nucleotidesLys_trna and Val_trna are separated by 4 nucleotidesVal_trna and Val_trna are separated by 44 nucleotidesVal_trna and gltX are separated by 258 nucleotides JDDGAC_26180: yfeR - Uncharacterized HTH-type transcriptional regulator YfeR, at 5,008,612 to 5,009,538 yfeR JDDGAC_26185: JDDGAC_26185 - flxA-like family protein, at 5,009,529 to 5,009,870 _26185 JDDGAC_26190: Lys_trna - tRNA-Lys(ttt), at 5,009,990 to 5,010,065 _trna JDDGAC_26195: Val_trna - tRNA-Val(tac), at 5,010,070 to 5,010,145 _trna JDDGAC_26200: Val_trna - tRNA-Val(tac), at 5,010,190 to 5,010,265 _trna JDDGAC_26205: gltX - glutamate--tRNA ligase, at 5,010,524 to 5,011,939 gltX Position (kb) 5009 5010Strain fitness (log2 ratio) -3 -2 -1 0 1at 5008.619 kb on - strandat 5008.619 kb on - strandat 5008.625 kb on + strandat 5008.653 kb on - strandat 5008.690 kb on - strandat 5008.843 kb on - strand, within yfeRat 5008.843 kb on - strand, within yfeRat 5008.933 kb on - strand, within yfeRat 5009.155 kb on + strand, within yfeRat 5009.155 kb on + strand, within yfeRat 5009.156 kb on - strand, within yfeRat 5009.156 kb on - strand, within yfeRat 5009.156 kb on - strand, within yfeRat 5009.156 kb on - strand, within yfeRat 5009.156 kb on - strand, within yfeRat 5009.159 kb on + strand, within yfeRat 5009.159 kb on + strand, within yfeRat 5009.203 kb on + strand, within yfeRat 5009.253 kb on + strand, within yfeRat 5009.368 kb on - strand, within yfeRat 5009.391 kb on + strand, within yfeRat 5009.466 kb on - strandat 5009.493 kb on + strandat 5009.534 kb on + strandat 5009.535 kb on - strandat 5009.536 kb on + strandat 5009.536 kb on + strandat 5009.536 kb on + strandat 5009.537 kb on - strandat 5009.537 kb on - strandat 5009.537 kb on - strandat 5009.537 kb on - strandat 5009.537 kb on - strandat 5009.537 kb on - strandat 5009.727 kb on + strand, within JDDGAC_26185at 5009.727 kb on + strand, within JDDGAC_26185at 5009.727 kb on + strand, within JDDGAC_26185at 5009.728 kb on - strand, within JDDGAC_26185at 5009.728 kb on - strand, within JDDGAC_26185at 5009.822 kb on + strand, within JDDGAC_26185at 5009.823 kb on - strand, within JDDGAC_26185at 5009.891 kb on - strandat 5009.986 kb on - strandat 5010.178 kb on - strandat 5010.178 kb on - strandat 5010.182 kb on - strandat 5010.182 kb on - strandat 5010.187 kb on - strandat 5010.187 kb on - strandat 5010.428 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
remove
5,008,619 - +0.1
5,008,619 - +0.4
5,008,625 + +0.8
5,008,653 - -0.3
5,008,690 - +0.2
5,008,843 - yfeR JDDGAC_26180 0.25 -0.4
5,008,843 - yfeR JDDGAC_26180 0.25 +0.4
5,008,933 - yfeR JDDGAC_26180 0.35 +0.1
5,009,155 + yfeR JDDGAC_26180 0.59 -0.5
5,009,155 + yfeR JDDGAC_26180 0.59 +0.1
5,009,156 - yfeR JDDGAC_26180 0.59 -0.6
5,009,156 - yfeR JDDGAC_26180 0.59 +0.3
5,009,156 - yfeR JDDGAC_26180 0.59 +1.4
5,009,156 - yfeR JDDGAC_26180 0.59 -3.0
5,009,156 - yfeR JDDGAC_26180 0.59 +0.4
5,009,159 + yfeR JDDGAC_26180 0.59 -1.2
5,009,159 + yfeR JDDGAC_26180 0.59 +0.4
5,009,203 + yfeR JDDGAC_26180 0.64 +1.5
5,009,253 + yfeR JDDGAC_26180 0.69 -0.7
5,009,368 - yfeR JDDGAC_26180 0.82 -1.1
5,009,391 + yfeR JDDGAC_26180 0.84 -0.0
5,009,466 - -0.5
5,009,493 + +0.8
5,009,534 + -0.5
5,009,535 - -0.1
5,009,536 + -0.7
5,009,536 + -0.2
5,009,536 + +0.0
5,009,537 - +0.1
5,009,537 - +0.2
5,009,537 - +1.5
5,009,537 - +0.1
5,009,537 - -0.5
5,009,537 - +0.2
5,009,727 + JDDGAC_26185 0.58 -1.6
5,009,727 + JDDGAC_26185 0.58 -1.8
5,009,727 + JDDGAC_26185 0.58 -0.7
5,009,728 - JDDGAC_26185 0.58 -1.5
5,009,728 - JDDGAC_26185 0.58 -0.7
5,009,822 + JDDGAC_26185 0.86 +1.1
5,009,823 - JDDGAC_26185 0.86 +0.7
5,009,891 - +0.2
5,009,986 - +0.4
5,010,178 - +0.4
5,010,178 - -0.6
5,010,182 - -0.9
5,010,182 - -1.9
5,010,187 - +0.2
5,010,187 - +0.2
5,010,428 - +1.3

Or see this region's nucleotide sequence