Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07900

Experiment: WM_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntureD1 and JDDGAC_07895 are separated by 380 nucleotidesJDDGAC_07895 and opgE are separated by 224 nucleotidesopgE and dgkA are separated by 92 nucleotidesdgkA and tnp-IS3 are separated by 391 nucleotides JDDGAC_07890: ureD1 - Putative urease accessory UreD-like protein, at 1,362,939 to 1,363,637 ureD1 JDDGAC_07895: JDDGAC_07895 - hypothetical protein, at 1,364,018 to 1,364,293 _07895 JDDGAC_07900: opgE - phosphoethanolamine transferase, at 1,364,518 to 1,366,137 opgE JDDGAC_07905: dgkA - Diacylglycerol kinase, at 1,366,230 to 1,366,589 dgkA JDDGAC_07910: tnp-IS3 - IS3 family transposase, at 1,366,981 to 1,367,868 tnp-IS3 Position (kb) 1364 1365 1366 1367Strain fitness (log2 ratio) -1 0 1 2at 1363.784 kb on - strandat 1363.829 kb on + strandat 1363.830 kb on - strandat 1363.907 kb on + strandat 1363.940 kb on + strandat 1363.960 kb on - strandat 1363.971 kb on - strandat 1364.080 kb on + strand, within JDDGAC_07895at 1364.128 kb on + strand, within JDDGAC_07895at 1364.137 kb on + strand, within JDDGAC_07895at 1365.353 kb on + strand, within opgEat 1365.519 kb on + strand, within opgEat 1366.028 kb on + strandat 1366.117 kb on - strandat 1366.610 kb on + strandat 1366.847 kb on + strandat 1366.848 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
remove
1,363,784 - -1.6
1,363,829 + -0.1
1,363,830 - -0.2
1,363,907 + +0.8
1,363,940 + +0.1
1,363,960 - -0.2
1,363,971 - +2.0
1,364,080 + JDDGAC_07895 0.22 -0.3
1,364,128 + JDDGAC_07895 0.40 -1.0
1,364,137 + JDDGAC_07895 0.43 +0.5
1,365,353 + opgE JDDGAC_07900 0.52 -0.5
1,365,519 + opgE JDDGAC_07900 0.62 -1.5
1,366,028 + +2.0
1,366,117 - +0.5
1,366,610 + -1.6
1,366,847 + +1.1
1,366,848 - +0.7

Or see this region's nucleotide sequence