Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07750 and JDDGAC_07755 overlap by 8 nucleotides JDDGAC_07755 and JDDGAC_07760 are separated by 1 nucleotides JDDGAC_07760 and citE overlap by 1 nucleotides citE and JDDGAC_07770 are separated by 10 nucleotides
JDDGAC_07750: JDDGAC_07750 - adenine/guanine phosphoribosyltransferase, at 1,343,019 to 1,344,161
_07750
JDDGAC_07755: JDDGAC_07755 - putative hydrolase (HAD superfamily), at 1,344,154 to 1,344,927
_07755
JDDGAC_07760: JDDGAC_07760 - Phosphoribosyl transferase (PRTase), at 1,344,929 to 1,346,008
_07760
JDDGAC_07765: citE - citrate lyase subunit beta, at 1,346,008 to 1,346,964
citE
JDDGAC_07770: JDDGAC_07770 - DUF4236 domain-containing protein, at 1,346,975 to 1,348,183
_07770
Position (kb) 1344
1345
1346
1347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1343.999 kb on + strand, within JDDGAC_07750 at 1344.093 kb on - strand at 1344.110 kb on + strand at 1344.149 kb on + strand at 1344.150 kb on - strand at 1344.153 kb on + strand at 1344.153 kb on + strand at 1344.154 kb on - strand at 1344.471 kb on + strand, within JDDGAC_07755 at 1344.601 kb on + strand, within JDDGAC_07755 at 1344.601 kb on + strand, within JDDGAC_07755 at 1344.695 kb on - strand, within JDDGAC_07755 at 1344.712 kb on - strand, within JDDGAC_07755 at 1344.715 kb on - strand, within JDDGAC_07755 at 1345.210 kb on - strand, within JDDGAC_07760 at 1345.296 kb on - strand, within JDDGAC_07760 at 1345.296 kb on - strand, within JDDGAC_07760 at 1345.402 kb on + strand, within JDDGAC_07760 at 1345.792 kb on + strand, within JDDGAC_07760 at 1345.813 kb on + strand, within JDDGAC_07760 at 1345.851 kb on + strand, within JDDGAC_07760 at 1345.852 kb on - strand, within JDDGAC_07760 at 1345.852 kb on - strand, within JDDGAC_07760 at 1345.852 kb on - strand, within JDDGAC_07760 at 1345.852 kb on - strand, within JDDGAC_07760 at 1345.872 kb on + strand, within JDDGAC_07760 at 1345.872 kb on + strand, within JDDGAC_07760 at 1345.872 kb on + strand, within JDDGAC_07760 at 1345.885 kb on + strand, within JDDGAC_07760 at 1345.885 kb on + strand, within JDDGAC_07760 at 1345.938 kb on + strand at 1345.939 kb on - strand at 1345.939 kb on - strand at 1346.050 kb on + strand at 1346.050 kb on + strand at 1346.051 kb on - strand at 1346.073 kb on + strand at 1346.226 kb on + strand, within citE at 1346.367 kb on + strand, within citE at 1346.488 kb on - strand, within citE at 1346.488 kb on - strand, within citE at 1346.578 kb on + strand, within citE at 1346.578 kb on + strand, within citE at 1346.579 kb on - strand, within citE at 1346.579 kb on - strand, within citE at 1346.639 kb on + strand, within citE at 1346.650 kb on - strand, within citE at 1346.823 kb on + strand, within citE at 1346.824 kb on - strand, within citE at 1346.939 kb on + strand at 1346.944 kb on - strand at 1346.974 kb on - strand at 1347.008 kb on - strand at 1347.008 kb on - strand at 1347.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 1,343,999 + JDDGAC_07750 0.86 -1.6 1,344,093 - -2.1 1,344,110 + +0.2 1,344,149 + -2.1 1,344,150 - -0.2 1,344,153 + -2.2 1,344,153 + +0.5 1,344,154 - +1.3 1,344,471 + JDDGAC_07755 0.41 -0.3 1,344,601 + JDDGAC_07755 0.58 -1.2 1,344,601 + JDDGAC_07755 0.58 +0.2 1,344,695 - JDDGAC_07755 0.70 +1.3 1,344,712 - JDDGAC_07755 0.72 -0.9 1,344,715 - JDDGAC_07755 0.72 +0.2 1,345,210 - JDDGAC_07760 0.26 -2.0 1,345,296 - JDDGAC_07760 0.34 +0.5 1,345,296 - JDDGAC_07760 0.34 +3.3 1,345,402 + JDDGAC_07760 0.44 -0.6 1,345,792 + JDDGAC_07760 0.80 -1.0 1,345,813 + JDDGAC_07760 0.82 -1.8 1,345,851 + JDDGAC_07760 0.85 -1.7 1,345,852 - JDDGAC_07760 0.85 +1.0 1,345,852 - JDDGAC_07760 0.85 -2.9 1,345,852 - JDDGAC_07760 0.85 +1.4 1,345,852 - JDDGAC_07760 0.85 -1.6 1,345,872 + JDDGAC_07760 0.87 -1.3 1,345,872 + JDDGAC_07760 0.87 -1.3 1,345,872 + JDDGAC_07760 0.87 -1.1 1,345,885 + JDDGAC_07760 0.89 -1.5 1,345,885 + JDDGAC_07760 0.89 -1.1 1,345,938 + +0.1 1,345,939 - +0.8 1,345,939 - +0.5 1,346,050 + -0.9 1,346,050 + -0.3 1,346,051 - -1.2 1,346,073 + -0.5 1,346,226 + citE JDDGAC_07765 0.23 -2.3 1,346,367 + citE JDDGAC_07765 0.38 -1.0 1,346,488 - citE JDDGAC_07765 0.50 -1.9 1,346,488 - citE JDDGAC_07765 0.50 -0.1 1,346,578 + citE JDDGAC_07765 0.60 -0.1 1,346,578 + citE JDDGAC_07765 0.60 +0.6 1,346,579 - citE JDDGAC_07765 0.60 +0.3 1,346,579 - citE JDDGAC_07765 0.60 -0.1 1,346,639 + citE JDDGAC_07765 0.66 -0.8 1,346,650 - citE JDDGAC_07765 0.67 -1.4 1,346,823 + citE JDDGAC_07765 0.85 -0.1 1,346,824 - citE JDDGAC_07765 0.85 +1.5 1,346,939 + +0.3 1,346,944 - +0.2 1,346,974 - +0.6 1,347,008 - -0.9 1,347,008 - +0.3 1,347,008 - -0.7
Or see this region's nucleotide sequence