Experiment: WM_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06650 and JDDGAC_06655 are separated by 205 nucleotides JDDGAC_06655 and JDDGAC_06660 are separated by 12 nucleotides JDDGAC_06660 and JDDGAC_06665 are separated by 12 nucleotides
JDDGAC_06650: JDDGAC_06650 - terminase, at 1,160,261 to 1,160,803
_06650
JDDGAC_06655: JDDGAC_06655 - phage head-tail connector protein, at 1,161,009 to 1,161,422
_06655
JDDGAC_06660: JDDGAC_06660 - head decoration protein, at 1,161,435 to 1,161,770
_06660
JDDGAC_06665: JDDGAC_06665 - capsid protein, at 1,161,783 to 1,162,838
_06665
Position (kb)
1161
1162 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1160.443 kb on + strand, within JDDGAC_06650 at 1160.708 kb on - strand, within JDDGAC_06650 at 1160.808 kb on - strand at 1160.839 kb on + strand at 1160.919 kb on - strand at 1161.068 kb on - strand, within JDDGAC_06655 at 1161.068 kb on - strand, within JDDGAC_06655 at 1161.166 kb on - strand, within JDDGAC_06655 at 1161.166 kb on - strand, within JDDGAC_06655 at 1161.177 kb on - strand, within JDDGAC_06655 at 1161.177 kb on - strand, within JDDGAC_06655 at 1161.207 kb on - strand, within JDDGAC_06655 at 1161.331 kb on + strand, within JDDGAC_06655 at 1161.331 kb on + strand, within JDDGAC_06655 at 1161.332 kb on - strand, within JDDGAC_06655 at 1161.340 kb on - strand, within JDDGAC_06655 at 1161.381 kb on - strand at 1161.534 kb on - strand, within JDDGAC_06660 at 1161.554 kb on - strand, within JDDGAC_06660 at 1161.686 kb on + strand, within JDDGAC_06660 at 1161.712 kb on - strand, within JDDGAC_06660 at 1161.712 kb on - strand, within JDDGAC_06660 at 1161.712 kb on - strand, within JDDGAC_06660 at 1161.771 kb on - strand at 1161.856 kb on + strand at 1161.971 kb on + strand, within JDDGAC_06665 at 1162.043 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.082 kb on - strand, within JDDGAC_06665 at 1162.160 kb on - strand, within JDDGAC_06665 at 1162.160 kb on - strand, within JDDGAC_06665 at 1162.201 kb on - strand, within JDDGAC_06665 at 1162.267 kb on + strand, within JDDGAC_06665 at 1162.267 kb on + strand, within JDDGAC_06665 at 1162.371 kb on + strand, within JDDGAC_06665 at 1162.372 kb on - strand, within JDDGAC_06665 at 1162.496 kb on - strand, within JDDGAC_06665 at 1162.499 kb on + strand, within JDDGAC_06665 at 1162.499 kb on + strand, within JDDGAC_06665 at 1162.500 kb on - strand, within JDDGAC_06665
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK32 remove 1,160,443 + JDDGAC_06650 0.34 -0.8 1,160,708 - JDDGAC_06650 0.82 +0.2 1,160,808 - +0.8 1,160,839 + -3.8 1,160,919 - -3.1 1,161,068 - JDDGAC_06655 0.14 -1.2 1,161,068 - JDDGAC_06655 0.14 +0.4 1,161,166 - JDDGAC_06655 0.38 +0.9 1,161,166 - JDDGAC_06655 0.38 +0.7 1,161,177 - JDDGAC_06655 0.41 +0.4 1,161,177 - JDDGAC_06655 0.41 +1.2 1,161,207 - JDDGAC_06655 0.48 -1.7 1,161,331 + JDDGAC_06655 0.78 +0.7 1,161,331 + JDDGAC_06655 0.78 +0.1 1,161,332 - JDDGAC_06655 0.78 -0.7 1,161,340 - JDDGAC_06655 0.80 +1.0 1,161,381 - -1.9 1,161,534 - JDDGAC_06660 0.29 -1.4 1,161,554 - JDDGAC_06660 0.35 -0.6 1,161,686 + JDDGAC_06660 0.75 -0.5 1,161,712 - JDDGAC_06660 0.82 -0.5 1,161,712 - JDDGAC_06660 0.82 -2.6 1,161,712 - JDDGAC_06660 0.82 -0.5 1,161,771 - -1.9 1,161,856 + -1.2 1,161,971 + JDDGAC_06665 0.18 -0.4 1,162,043 - JDDGAC_06665 0.25 -0.9 1,162,082 - JDDGAC_06665 0.28 +1.0 1,162,082 - JDDGAC_06665 0.28 +0.6 1,162,082 - JDDGAC_06665 0.28 +0.1 1,162,082 - JDDGAC_06665 0.28 +0.4 1,162,160 - JDDGAC_06665 0.36 +0.6 1,162,160 - JDDGAC_06665 0.36 -0.1 1,162,201 - JDDGAC_06665 0.40 +0.2 1,162,267 + JDDGAC_06665 0.46 +0.7 1,162,267 + JDDGAC_06665 0.46 -0.1 1,162,371 + JDDGAC_06665 0.56 -0.6 1,162,372 - JDDGAC_06665 0.56 -0.5 1,162,496 - JDDGAC_06665 0.68 +0.7 1,162,499 + JDDGAC_06665 0.68 -0.8 1,162,499 + JDDGAC_06665 0.68 +0.3 1,162,500 - JDDGAC_06665 0.68 -2.0
Or see this region's nucleotide sequence