Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06660

Experiment: WM_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06650 and JDDGAC_06655 are separated by 205 nucleotidesJDDGAC_06655 and JDDGAC_06660 are separated by 12 nucleotidesJDDGAC_06660 and JDDGAC_06665 are separated by 12 nucleotides JDDGAC_06650: JDDGAC_06650 - terminase, at 1,160,261 to 1,160,803 _06650 JDDGAC_06655: JDDGAC_06655 - phage head-tail connector protein, at 1,161,009 to 1,161,422 _06655 JDDGAC_06660: JDDGAC_06660 - head decoration protein, at 1,161,435 to 1,161,770 _06660 JDDGAC_06665: JDDGAC_06665 - capsid protein, at 1,161,783 to 1,162,838 _06665 Position (kb) 1161 1162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1160.443 kb on + strand, within JDDGAC_06650at 1160.708 kb on - strand, within JDDGAC_06650at 1160.808 kb on - strandat 1160.839 kb on + strandat 1160.919 kb on - strandat 1161.068 kb on - strand, within JDDGAC_06655at 1161.068 kb on - strand, within JDDGAC_06655at 1161.166 kb on - strand, within JDDGAC_06655at 1161.166 kb on - strand, within JDDGAC_06655at 1161.177 kb on - strand, within JDDGAC_06655at 1161.177 kb on - strand, within JDDGAC_06655at 1161.207 kb on - strand, within JDDGAC_06655at 1161.331 kb on + strand, within JDDGAC_06655at 1161.331 kb on + strand, within JDDGAC_06655at 1161.332 kb on - strand, within JDDGAC_06655at 1161.340 kb on - strand, within JDDGAC_06655at 1161.381 kb on - strandat 1161.534 kb on - strand, within JDDGAC_06660at 1161.554 kb on - strand, within JDDGAC_06660at 1161.686 kb on + strand, within JDDGAC_06660at 1161.712 kb on - strand, within JDDGAC_06660at 1161.712 kb on - strand, within JDDGAC_06660at 1161.712 kb on - strand, within JDDGAC_06660at 1161.771 kb on - strandat 1161.856 kb on + strandat 1161.971 kb on + strand, within JDDGAC_06665at 1162.043 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.082 kb on - strand, within JDDGAC_06665at 1162.160 kb on - strand, within JDDGAC_06665at 1162.160 kb on - strand, within JDDGAC_06665at 1162.201 kb on - strand, within JDDGAC_06665at 1162.267 kb on + strand, within JDDGAC_06665at 1162.267 kb on + strand, within JDDGAC_06665at 1162.371 kb on + strand, within JDDGAC_06665at 1162.372 kb on - strand, within JDDGAC_06665at 1162.496 kb on - strand, within JDDGAC_06665at 1162.499 kb on + strand, within JDDGAC_06665at 1162.499 kb on + strand, within JDDGAC_06665at 1162.500 kb on - strand, within JDDGAC_06665

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK32
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1,160,443 + JDDGAC_06650 0.34 -0.8
1,160,708 - JDDGAC_06650 0.82 +0.2
1,160,808 - +0.8
1,160,839 + -3.8
1,160,919 - -3.1
1,161,068 - JDDGAC_06655 0.14 -1.2
1,161,068 - JDDGAC_06655 0.14 +0.4
1,161,166 - JDDGAC_06655 0.38 +0.9
1,161,166 - JDDGAC_06655 0.38 +0.7
1,161,177 - JDDGAC_06655 0.41 +0.4
1,161,177 - JDDGAC_06655 0.41 +1.2
1,161,207 - JDDGAC_06655 0.48 -1.7
1,161,331 + JDDGAC_06655 0.78 +0.7
1,161,331 + JDDGAC_06655 0.78 +0.1
1,161,332 - JDDGAC_06655 0.78 -0.7
1,161,340 - JDDGAC_06655 0.80 +1.0
1,161,381 - -1.9
1,161,534 - JDDGAC_06660 0.29 -1.4
1,161,554 - JDDGAC_06660 0.35 -0.6
1,161,686 + JDDGAC_06660 0.75 -0.5
1,161,712 - JDDGAC_06660 0.82 -0.5
1,161,712 - JDDGAC_06660 0.82 -2.6
1,161,712 - JDDGAC_06660 0.82 -0.5
1,161,771 - -1.9
1,161,856 + -1.2
1,161,971 + JDDGAC_06665 0.18 -0.4
1,162,043 - JDDGAC_06665 0.25 -0.9
1,162,082 - JDDGAC_06665 0.28 +1.0
1,162,082 - JDDGAC_06665 0.28 +0.6
1,162,082 - JDDGAC_06665 0.28 +0.1
1,162,082 - JDDGAC_06665 0.28 +0.4
1,162,160 - JDDGAC_06665 0.36 +0.6
1,162,160 - JDDGAC_06665 0.36 -0.1
1,162,201 - JDDGAC_06665 0.40 +0.2
1,162,267 + JDDGAC_06665 0.46 +0.7
1,162,267 + JDDGAC_06665 0.46 -0.1
1,162,371 + JDDGAC_06665 0.56 -0.6
1,162,372 - JDDGAC_06665 0.56 -0.5
1,162,496 - JDDGAC_06665 0.68 +0.7
1,162,499 + JDDGAC_06665 0.68 -0.8
1,162,499 + JDDGAC_06665 0.68 +0.3
1,162,500 - JDDGAC_06665 0.68 -2.0

Or see this region's nucleotide sequence