Strain Fitness in Pseudomonas sp. RS175 around PFR28_00242

Experiment: L-Proline (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00241 and PFR28_00242 are separated by 795 nucleotidesPFR28_00242 and PFR28_00243 are separated by 3 nucleotides PFR28_00241: PFR28_00241 - Disulfide bond formation protein B, at 268,363 to 268,857 _00241 PFR28_00242: PFR28_00242 - Cytochrome bo(3) ubiquinol oxidase subunit 2, at 269,653 to 270,600 _00242 PFR28_00243: PFR28_00243 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 270,604 to 272,634 _00243 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 269.105 kb on - strandat 269.197 kb on + strandat 269.198 kb on - strandat 269.270 kb on + strandat 269.271 kb on - strandat 269.271 kb on - strandat 269.271 kb on - strandat 269.320 kb on - strandat 269.337 kb on + strandat 269.337 kb on + strandat 269.337 kb on + strandat 269.338 kb on - strandat 269.443 kb on + strandat 269.469 kb on + strandat 269.469 kb on + strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.482 kb on + strandat 269.658 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.854 kb on + strand, within PFR28_00242at 269.854 kb on + strand, within PFR28_00242at 269.855 kb on - strand, within PFR28_00242at 269.881 kb on + strand, within PFR28_00242at 269.882 kb on - strand, within PFR28_00242at 269.882 kb on - strand, within PFR28_00242at 269.963 kb on - strand, within PFR28_00242at 269.963 kb on - strand, within PFR28_00242at 269.963 kb on - strand, within PFR28_00242at 269.971 kb on + strand, within PFR28_00242at 269.971 kb on + strand, within PFR28_00242at 269.971 kb on + strand, within PFR28_00242at 269.971 kb on + strand, within PFR28_00242at 269.972 kb on - strand, within PFR28_00242at 269.972 kb on - strand, within PFR28_00242at 270.200 kb on - strand, within PFR28_00242at 270.264 kb on + strand, within PFR28_00242at 270.264 kb on + strand, within PFR28_00242at 270.265 kb on - strand, within PFR28_00242at 270.265 kb on - strand, within PFR28_00242at 270.265 kb on - strand, within PFR28_00242at 270.277 kb on + strand, within PFR28_00242at 270.277 kb on + strand, within PFR28_00242at 270.277 kb on + strand, within PFR28_00242at 270.277 kb on + strand, within PFR28_00242at 270.372 kb on + strand, within PFR28_00242at 270.372 kb on + strand, within PFR28_00242at 270.372 kb on + strand, within PFR28_00242at 270.372 kb on + strand, within PFR28_00242at 270.394 kb on + strand, within PFR28_00242at 270.394 kb on + strand, within PFR28_00242at 270.394 kb on + strand, within PFR28_00242at 270.439 kb on + strand, within PFR28_00242at 270.440 kb on - strand, within PFR28_00242at 270.440 kb on - strand, within PFR28_00242at 270.480 kb on + strand, within PFR28_00242at 270.481 kb on - strand, within PFR28_00242at 270.484 kb on + strand, within PFR28_00242at 270.484 kb on + strand, within PFR28_00242at 270.484 kb on + strand, within PFR28_00242at 270.484 kb on + strand, within PFR28_00242at 270.485 kb on - strand, within PFR28_00242at 270.485 kb on - strand, within PFR28_00242at 270.485 kb on - strand, within PFR28_00242at 270.598 kb on + strandat 270.599 kb on - strandat 270.608 kb on + strandat 270.609 kb on - strandat 270.609 kb on - strandat 270.609 kb on - strandat 270.617 kb on + strandat 270.618 kb on - strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.712 kb on + strandat 270.713 kb on - strandat 270.730 kb on + strandat 270.730 kb on + strandat 270.731 kb on - strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.784 kb on + strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.785 kb on - strandat 270.881 kb on - strand, within PFR28_00243at 270.898 kb on + strand, within PFR28_00243at 270.898 kb on + strand, within PFR28_00243at 271.144 kb on + strand, within PFR28_00243at 271.144 kb on + strand, within PFR28_00243at 271.145 kb on - strand, within PFR28_00243at 271.145 kb on - strand, within PFR28_00243at 271.145 kb on - strand, within PFR28_00243at 271.145 kb on - strand, within PFR28_00243at 271.168 kb on + strand, within PFR28_00243at 271.169 kb on - strand, within PFR28_00243at 271.169 kb on - strand, within PFR28_00243at 271.169 kb on - strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.171 kb on + strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.172 kb on - strand, within PFR28_00243at 271.184 kb on + strand, within PFR28_00243at 271.185 kb on - strand, within PFR28_00243at 271.251 kb on + strand, within PFR28_00243at 271.251 kb on + strand, within PFR28_00243at 271.252 kb on - strand, within PFR28_00243at 271.375 kb on + strand, within PFR28_00243at 271.376 kb on - strand, within PFR28_00243at 271.426 kb on + strand, within PFR28_00243at 271.426 kb on + strand, within PFR28_00243at 271.426 kb on + strand, within PFR28_00243at 271.426 kb on + strand, within PFR28_00243at 271.426 kb on + strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.427 kb on - strand, within PFR28_00243at 271.465 kb on + strand, within PFR28_00243at 271.465 kb on + strand, within PFR28_00243at 271.465 kb on + strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.466 kb on - strand, within PFR28_00243at 271.555 kb on + strand, within PFR28_00243at 271.555 kb on + strand, within PFR28_00243at 271.555 kb on + strand, within PFR28_00243at 271.556 kb on - strand, within PFR28_00243at 271.556 kb on - strand, within PFR28_00243at 271.556 kb on - strand, within PFR28_00243at 271.556 kb on - strand, within PFR28_00243at 271.556 kb on - strand, within PFR28_00243

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C) 10 mM
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269,105 - +1.1
269,197 + -1.2
269,198 - -0.2
269,270 + -0.1
269,271 - -0.4
269,271 - +0.1
269,271 - -0.2
269,320 - -0.3
269,337 + -0.9
269,337 + -0.6
269,337 + +0.9
269,338 - -0.9
269,443 + -0.9
269,469 + +0.1
269,469 + +1.7
269,470 - +0.4
269,470 - +0.2
269,470 - -1.0
269,470 - -0.4
269,482 + +0.4
269,658 + +0.7
269,681 + -1.2
269,681 + +0.0
269,681 + -0.0
269,681 + +0.3
269,681 + -0.2
269,682 - -1.7
269,682 - +0.7
269,682 - +0.2
269,682 - -0.7
269,682 - -0.8
269,854 + PFR28_00242 0.21 -1.0
269,854 + PFR28_00242 0.21 +0.1
269,855 - PFR28_00242 0.21 -0.6
269,881 + PFR28_00242 0.24 +0.2
269,882 - PFR28_00242 0.24 -1.6
269,882 - PFR28_00242 0.24 -2.0
269,963 - PFR28_00242 0.33 +0.6
269,963 - PFR28_00242 0.33 +0.1
269,963 - PFR28_00242 0.33 -0.7
269,971 + PFR28_00242 0.34 -0.1
269,971 + PFR28_00242 0.34 +0.2
269,971 + PFR28_00242 0.34 -0.2
269,971 + PFR28_00242 0.34 +0.3
269,972 - PFR28_00242 0.34 -1.0
269,972 - PFR28_00242 0.34 +0.0
270,200 - PFR28_00242 0.58 -0.2
270,264 + PFR28_00242 0.64 -1.6
270,264 + PFR28_00242 0.64 -0.6
270,265 - PFR28_00242 0.65 -0.7
270,265 - PFR28_00242 0.65 -0.3
270,265 - PFR28_00242 0.65 -0.8
270,277 + PFR28_00242 0.66 -1.1
270,277 + PFR28_00242 0.66 -0.2
270,277 + PFR28_00242 0.66 +1.1
270,277 + PFR28_00242 0.66 -1.5
270,372 + PFR28_00242 0.76 -0.2
270,372 + PFR28_00242 0.76 -0.1
270,372 + PFR28_00242 0.76 -0.4
270,372 + PFR28_00242 0.76 -1.0
270,394 + PFR28_00242 0.78 -0.8
270,394 + PFR28_00242 0.78 -0.7
270,394 + PFR28_00242 0.78 -0.3
270,439 + PFR28_00242 0.83 -0.7
270,440 - PFR28_00242 0.83 -0.1
270,440 - PFR28_00242 0.83 -0.6
270,480 + PFR28_00242 0.87 -0.3
270,481 - PFR28_00242 0.87 +0.1
270,484 + PFR28_00242 0.88 -0.9
270,484 + PFR28_00242 0.88 -0.7
270,484 + PFR28_00242 0.88 -0.0
270,484 + PFR28_00242 0.88 -1.0
270,485 - PFR28_00242 0.88 -2.7
270,485 - PFR28_00242 0.88 -0.2
270,485 - PFR28_00242 0.88 -1.9
270,598 + -0.6
270,599 - +0.1
270,608 + +1.4
270,609 - +0.1
270,609 - -0.8
270,609 - +0.0
270,617 + -0.0
270,618 - +0.6
270,712 + -0.0
270,712 + -0.1
270,712 + -0.2
270,712 + +0.7
270,712 + -1.3
270,712 + -1.4
270,712 + -0.9
270,712 + +0.2
270,712 + -0.3
270,713 - -0.4
270,730 + -2.0
270,730 + +0.6
270,731 - -0.8
270,784 + +0.5
270,784 + +0.5
270,784 + -0.6
270,784 + +0.8
270,784 + +0.1
270,784 + +0.1
270,784 + +1.4
270,784 + +0.0
270,784 + +0.0
270,784 + +0.2
270,785 - -0.8
270,785 - -0.2
270,785 - -0.2
270,785 - -0.9
270,785 - +0.1
270,785 - +0.4
270,785 - -0.5
270,785 - -0.4
270,785 - +0.4
270,785 - -0.6
270,785 - +0.0
270,881 - PFR28_00243 0.14 -0.3
270,898 + PFR28_00243 0.14 -1.4
270,898 + PFR28_00243 0.14 +0.2
271,144 + PFR28_00243 0.27 -1.0
271,144 + PFR28_00243 0.27 -0.5
271,145 - PFR28_00243 0.27 -0.4
271,145 - PFR28_00243 0.27 +0.4
271,145 - PFR28_00243 0.27 +0.7
271,145 - PFR28_00243 0.27 +0.1
271,168 + PFR28_00243 0.28 -0.3
271,169 - PFR28_00243 0.28 +0.2
271,169 - PFR28_00243 0.28 -0.4
271,169 - PFR28_00243 0.28 -0.1
271,171 + PFR28_00243 0.28 +0.8
271,171 + PFR28_00243 0.28 -0.6
271,171 + PFR28_00243 0.28 +0.5
271,171 + PFR28_00243 0.28 -0.3
271,171 + PFR28_00243 0.28 -1.1
271,171 + PFR28_00243 0.28 -0.2
271,171 + PFR28_00243 0.28 +1.4
271,171 + PFR28_00243 0.28 +0.6
271,171 + PFR28_00243 0.28 -1.0
271,171 + PFR28_00243 0.28 -1.0
271,172 - PFR28_00243 0.28 +0.8
271,172 - PFR28_00243 0.28 -0.6
271,172 - PFR28_00243 0.28 +0.8
271,172 - PFR28_00243 0.28 -0.6
271,172 - PFR28_00243 0.28 -0.4
271,172 - PFR28_00243 0.28 -1.6
271,172 - PFR28_00243 0.28 -1.2
271,172 - PFR28_00243 0.28 -0.5
271,184 + PFR28_00243 0.29 -0.9
271,185 - PFR28_00243 0.29 +0.6
271,251 + PFR28_00243 0.32 -0.2
271,251 + PFR28_00243 0.32 +0.2
271,252 - PFR28_00243 0.32 +0.2
271,375 + PFR28_00243 0.38 -0.8
271,376 - PFR28_00243 0.38 +0.3
271,426 + PFR28_00243 0.40 -1.0
271,426 + PFR28_00243 0.40 +1.4
271,426 + PFR28_00243 0.40 +0.3
271,426 + PFR28_00243 0.40 -0.4
271,426 + PFR28_00243 0.40 +0.2
271,427 - PFR28_00243 0.41 -0.2
271,427 - PFR28_00243 0.41 -0.2
271,427 - PFR28_00243 0.41 -1.2
271,427 - PFR28_00243 0.41 -0.6
271,427 - PFR28_00243 0.41 -0.9
271,427 - PFR28_00243 0.41 -1.3
271,427 - PFR28_00243 0.41 +0.9
271,465 + PFR28_00243 0.42 -0.1
271,465 + PFR28_00243 0.42 -0.2
271,465 + PFR28_00243 0.42 +0.1
271,466 - PFR28_00243 0.42 -0.7
271,466 - PFR28_00243 0.42 +2.0
271,466 - PFR28_00243 0.42 -2.6
271,466 - PFR28_00243 0.42 -1.1
271,466 - PFR28_00243 0.42 +0.6
271,466 - PFR28_00243 0.42 -0.1
271,555 + PFR28_00243 0.47 -0.3
271,555 + PFR28_00243 0.47 +3.0
271,555 + PFR28_00243 0.47 -1.8
271,556 - PFR28_00243 0.47 -0.2
271,556 - PFR28_00243 0.47 -1.2
271,556 - PFR28_00243 0.47 -1.2
271,556 - PFR28_00243 0.47 -0.6
271,556 - PFR28_00243 0.47 +0.9

Or see this region's nucleotide sequence