Experiment: WM_JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleG6-2 and nleG-3 are separated by 72 nucleotides nleG-3 and JDDGAC_16610 are separated by 111 nucleotides JDDGAC_16610 and JDDGAC_16615 are separated by 1 nucleotides
JDDGAC_16600: nleG6-2 - DUF1076 domain-containing protein, at 3,133,429 to 3,134,058
nleG6-2
JDDGAC_16605: nleG-3 - T3SS effector NleG family protein, at 3,134,131 to 3,134,703
nleG-3
JDDGAC_16610: JDDGAC_16610 - phage tail protein, at 3,134,815 to 3,135,084
_16610
JDDGAC_16615: JDDGAC_16615 - phage tail protein, at 3,135,086 to 3,136,399
_16615
Position (kb) 3134
3135
3136 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3134.209 kb on + strand, within nleG-3 at 3134.287 kb on + strand, within nleG-3 at 3134.397 kb on + strand, within nleG-3 at 3134.566 kb on - strand, within nleG-3 at 3134.575 kb on - strand, within nleG-3 at 3134.577 kb on - strand, within nleG-3 at 3134.577 kb on - strand, within nleG-3 at 3134.587 kb on - strand, within nleG-3 at 3134.684 kb on + strand at 3134.684 kb on + strand at 3134.684 kb on + strand at 3134.684 kb on + strand at 3134.685 kb on - strand at 3134.689 kb on + strand at 3134.720 kb on - strand at 3134.725 kb on + strand at 3134.726 kb on - strand at 3134.729 kb on + strand at 3135.001 kb on + strand, within JDDGAC_16610 at 3135.001 kb on + strand, within JDDGAC_16610 at 3135.001 kb on + strand, within JDDGAC_16610 at 3135.006 kb on + strand, within JDDGAC_16610 at 3135.006 kb on + strand, within JDDGAC_16610
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK42 remove 3,134,209 + nleG-3 JDDGAC_16605 0.14 +2.4 3,134,287 + nleG-3 JDDGAC_16605 0.27 +0.8 3,134,397 + nleG-3 JDDGAC_16605 0.46 -0.5 3,134,566 - nleG-3 JDDGAC_16605 0.76 -0.7 3,134,575 - nleG-3 JDDGAC_16605 0.77 -0.2 3,134,577 - nleG-3 JDDGAC_16605 0.78 -2.5 3,134,577 - nleG-3 JDDGAC_16605 0.78 -1.1 3,134,587 - nleG-3 JDDGAC_16605 0.80 -1.7 3,134,684 + -2.9 3,134,684 + -2.6 3,134,684 + -0.3 3,134,684 + -3.8 3,134,685 - -0.0 3,134,689 + -2.9 3,134,720 - -0.1 3,134,725 + +1.1 3,134,726 - -0.8 3,134,729 + +1.9 3,135,001 + JDDGAC_16610 0.69 -1.1 3,135,001 + JDDGAC_16610 0.69 -1.1 3,135,001 + JDDGAC_16610 0.69 -2.3 3,135,006 + JDDGAC_16610 0.71 -0.5 3,135,006 + JDDGAC_16610 0.71 +3.3
Or see this region's nucleotide sequence