Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10695

Experiment: WM_JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_10695 and rhsA are separated by 24 nucleotides JDDGAC_10695: JDDGAC_10695 - Uncharacterized protein YbfC, at 1,912,569 to 1,913,111 _10695 JDDGAC_10700: rhsA - RHS element protein, at 1,913,136 to 1,917,335 rhsA Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1 2at 1911.650 kb on - strandat 1911.794 kb on + strandat 1911.806 kb on + strandat 1911.863 kb on + strandat 1912.406 kb on - strandat 1912.406 kb on - strandat 1912.707 kb on - strand, within JDDGAC_10695at 1913.265 kb on - strandat 1913.277 kb on + strandat 1913.367 kb on - strandat 1913.402 kb on - strandat 1913.402 kb on - strandat 1913.411 kb on - strandat 1913.493 kb on + strandat 1913.493 kb on + strandat 1913.494 kb on - strandat 1913.506 kb on - strandat 1913.611 kb on - strand, within rhsAat 1913.613 kb on - strand, within rhsAat 1913.614 kb on + strand, within rhsAat 1913.614 kb on + strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_JK42
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1,911,650 - +0.7
1,911,794 + -1.6
1,911,806 + +0.0
1,911,863 + -0.2
1,912,406 - +2.5
1,912,406 - -1.9
1,912,707 - JDDGAC_10695 0.25 -1.2
1,913,265 - -2.0
1,913,277 + -2.0
1,913,367 - -0.7
1,913,402 - +0.4
1,913,402 - -0.0
1,913,411 - +0.0
1,913,493 + +1.0
1,913,493 + -0.2
1,913,494 - +1.6
1,913,506 - +1.2
1,913,611 - rhsA JDDGAC_10700 0.11 -2.5
1,913,613 - rhsA JDDGAC_10700 0.11 -1.9
1,913,614 + rhsA JDDGAC_10700 0.11 +0.8
1,913,614 + rhsA JDDGAC_10700 0.11 +0.5

Or see this region's nucleotide sequence