Strain Fitness in Escherichia coli ECRC101 around MCAODC_06710

Experiment: GB_Bas38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_Bas38
1,359,692	+	hmsP	MCAODC_06705	0.62	+0.7
1,359,728	-	hmsP	MCAODC_06705	0.64	-2.0
1,359,779	-	hmsP	MCAODC_06705	0.67	-2.3
1,359,826	+	hmsP	MCAODC_06705	0.69	-0.8
1,359,927	-	hmsP	MCAODC_06705	0.74	-2.1
1,359,927	-	hmsP	MCAODC_06705	0.74	+1.3
1,359,927	-	hmsP	MCAODC_06705	0.74	-0.6
1,359,927	-	hmsP	MCAODC_06705	0.74	-0.1
1,359,944	-	hmsP	MCAODC_06705	0.75	-3.5
1,359,978	-	hmsP	MCAODC_06705	0.77	+0.5
1,359,989	+	hmsP	MCAODC_06705	0.77	+0.8
1,360,061	+	hmsP	MCAODC_06705	0.81	-0.2
1,360,061	+	hmsP	MCAODC_06705	0.81	+0.3
1,360,062	-	hmsP	MCAODC_06705	0.81	+0.1
1,360,062	-	hmsP	MCAODC_06705	0.81	-1.4
1,360,062	-	hmsP	MCAODC_06705	0.81	+1.5
1,360,107	-	hmsP	MCAODC_06705	0.83	+0.8
1,360,241	+				-0.4
1,360,241	+				-0.4
1,360,241	+				-2.6
1,360,263	-				-1.8
1,360,263	-				-0.9
1,360,288	+				+0.6
1,360,288	+				+1.1
1,360,289	-				-3.0
1,360,356	-				+0.9
1,360,413	+				+0.8
1,360,429	-				-2.3
1,360,429	-				+1.1
1,360,524	-				+0.6
1,360,663	-				-1.8
1,360,672	+				-1.5
1,360,701	+				+0.4
1,360,702	-				-0.4
1,360,747	+	dctA	MCAODC_06710	0.10	+0.6
1,360,748	-	dctA	MCAODC_06710	0.10	+2.0
1,360,850	+	dctA	MCAODC_06710	0.18	-0.4
1,360,850	+	dctA	MCAODC_06710	0.18	+0.9
1,360,867	+	dctA	MCAODC_06710	0.20	-0.3
1,360,867	+	dctA	MCAODC_06710	0.20	+0.6
1,360,868	-	dctA	MCAODC_06710	0.20	-0.2
1,360,883	-	dctA	MCAODC_06710	0.21	+2.2
1,360,883	-	dctA	MCAODC_06710	0.21	-1.8
1,360,891	+	dctA	MCAODC_06710	0.22	-0.5
1,360,891	+	dctA	MCAODC_06710	0.22	+0.3
1,360,891	+	dctA	MCAODC_06710	0.22	-1.5
1,360,970	+	dctA	MCAODC_06710	0.28	+4.5
1,361,011	+	dctA	MCAODC_06710	0.31	-1.6
1,361,011	+	dctA	MCAODC_06710	0.31	-0.2
1,361,085	+	dctA	MCAODC_06710	0.37	+2.3
1,361,086	-	dctA	MCAODC_06710	0.37	+1.3
1,361,182	+	dctA	MCAODC_06710	0.44	-1.0
1,361,182	+	dctA	MCAODC_06710	0.44	+0.6
1,361,182	+	dctA	MCAODC_06710	0.44	+1.1
1,361,182	+	dctA	MCAODC_06710	0.44	-0.8
1,361,182	+	dctA	MCAODC_06710	0.44	-2.4
1,361,183	-	dctA	MCAODC_06710	0.44	-0.1
1,361,183	-	dctA	MCAODC_06710	0.44	-0.4
1,361,203	+	dctA	MCAODC_06710	0.46	-1.3
1,361,203	+	dctA	MCAODC_06710	0.46	+0.7
1,361,203	+	dctA	MCAODC_06710	0.46	-4.6
1,361,204	-	dctA	MCAODC_06710	0.46	-0.8
1,361,230	+	dctA	MCAODC_06710	0.48	-2.7
1,361,240	-	dctA	MCAODC_06710	0.49	+0.0
1,361,240	-	dctA	MCAODC_06710	0.49	-1.8
1,361,243	+	dctA	MCAODC_06710	0.49	+0.9
1,361,291	+	dctA	MCAODC_06710	0.53	+1.6
1,361,291	+	dctA	MCAODC_06710	0.53	+0.0
1,361,291	+	dctA	MCAODC_06710	0.53	-1.1
1,361,291	+	dctA	MCAODC_06710	0.53	+0.0
1,361,292	-	dctA	MCAODC_06710	0.53	+0.4
1,361,297	-	dctA	MCAODC_06710	0.53	+0.5
1,361,297	-	dctA	MCAODC_06710	0.53	+0.7
1,361,297	-	dctA	MCAODC_06710	0.53	-2.4
1,361,297	-	dctA	MCAODC_06710	0.53	-1.2
1,361,297	-	dctA	MCAODC_06710	0.53	+0.5
1,361,302	+	dctA	MCAODC_06710	0.54	+0.2
1,361,303	-	dctA	MCAODC_06710	0.54	-0.4
1,361,323	-	dctA	MCAODC_06710	0.55	-1.0
1,361,339	-	dctA	MCAODC_06710	0.56	+1.1
1,361,376	-	dctA	MCAODC_06710	0.59	-0.8
1,361,376	-	dctA	MCAODC_06710	0.59	-1.5
1,361,400	+	dctA	MCAODC_06710	0.61	+0.7
1,361,400	+	dctA	MCAODC_06710	0.61	-2.2
1,361,400	+	dctA	MCAODC_06710	0.61	-2.0
1,361,401	-	dctA	MCAODC_06710	0.61	-0.4
1,361,437	+	dctA	MCAODC_06710	0.64	+0.1
1,361,504	+	dctA	MCAODC_06710	0.69	-2.7
1,361,533	-	dctA	MCAODC_06710	0.71	-1.7
1,361,534	+	dctA	MCAODC_06710	0.72	-2.5
1,361,534	+	dctA	MCAODC_06710	0.72	-1.4
1,361,535	-	dctA	MCAODC_06710	0.72	-2.4
1,361,535	-	dctA	MCAODC_06710	0.72	-1.2
1,361,535	-	dctA	MCAODC_06710	0.72	-3.2
1,361,535	-	dctA	MCAODC_06710	0.72	-0.1
1,361,572	+	dctA	MCAODC_06710	0.75	-0.2
1,361,572	+	dctA	MCAODC_06710	0.75	-2.7
1,361,573	-	dctA	MCAODC_06710	0.75	-1.3
1,361,610	+	dctA	MCAODC_06710	0.77	+0.3
1,361,611	-	dctA	MCAODC_06710	0.78	-0.2
1,361,666	-	dctA	MCAODC_06710	0.82	+1.0
1,361,746	+	dctA	MCAODC_06710	0.88	+1.1
1,361,747	-	dctA	MCAODC_06710	0.88	+2.4
1,361,747	-	dctA	MCAODC_06710	0.88	-0.5
1,361,791	-				+0.0
1,361,791	-				-0.1
1,361,809	+				+0.7
1,361,809	+				-1.0
1,361,810	-				-0.8
1,361,810	-				-1.5
1,361,810	-				+0.4
1,361,810	-				+0.5
1,361,889	+				-1.5
1,361,897	+				+1.1
1,361,898	-				-0.7
1,361,910	+				+0.1
1,361,910	+				-1.7
1,361,910	+				-0.3
1,361,911	-				+0.2
1,361,950	+				-1.9
1,361,950	+				-0.9
1,361,950	+				-0.9
1,361,951	-				-1.5
1,361,973	+				+0.2
1,361,973	+				-1.6
1,361,973	+				-1.2
1,361,974	-				-2.8
1,361,974	-				-0.3
1,361,997	-				-1.8
1,362,052	+				-1.8
1,362,101	+				+1.8
1,362,101	+				-3.5
1,362,101	+				-2.9
1,362,101	+				+0.6
1,362,101	+				-2.5
1,362,102	-				-2.2
1,362,244	+				+1.5
1,362,245	-				-0.4
1,362,308	+	pqqL	MCAODC_06715	0.13	-3.1
1,362,312	-	pqqL	MCAODC_06715	0.13	-1.2
1,362,332	+	pqqL	MCAODC_06715	0.14	+0.1
1,362,333	-	pqqL	MCAODC_06715	0.14	+0.1
1,362,333	-	pqqL	MCAODC_06715	0.14	-0.3
1,362,348	+	pqqL	MCAODC_06715	0.15	+0.9
1,362,349	-	pqqL	MCAODC_06715	0.15	+4.6
1,362,471	+	pqqL	MCAODC_06715	0.23	+2.0
1,362,471	+	pqqL	MCAODC_06715	0.23	+1.1
1,362,472	-	pqqL	MCAODC_06715	0.24	+1.5
1,362,472	-	pqqL	MCAODC_06715	0.24	-1.8
1,362,472	-	pqqL	MCAODC_06715	0.24	-2.2
1,362,506	+	pqqL	MCAODC_06715	0.26	+0.8
1,362,540	+	pqqL	MCAODC_06715	0.28	-0.7
1,362,540	+	pqqL	MCAODC_06715	0.28	-0.9
1,362,541	-	pqqL	MCAODC_06715	0.28	-0.8
1,362,569	+	pqqL	MCAODC_06715	0.30	-3.6
1,362,638	+	pqqL	MCAODC_06715	0.35	+0.1
1,362,638	+	pqqL	MCAODC_06715	0.35	+3.7
1,362,638	+	pqqL	MCAODC_06715	0.35	-1.8
1,362,639	-	pqqL	MCAODC_06715	0.35	-1.5
1,362,639	-	pqqL	MCAODC_06715	0.35	-0.0
1,362,639	-	pqqL	MCAODC_06715	0.35	-0.7
1,362,639	-	pqqL	MCAODC_06715	0.35	+0.2
1,362,639	-	pqqL	MCAODC_06715	0.35	-0.2
1,362,683	-	pqqL	MCAODC_06715	0.38	-0.6
1,362,756	+	pqqL	MCAODC_06715	0.42	+1.8
1,362,757	-	pqqL	MCAODC_06715	0.43	+1.4
1,362,757	-	pqqL	MCAODC_06715	0.43	-0.1