Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegW and yegV overlap by 27 nucleotides yegV and JDDGAC_28205 overlap by 4 nucleotides JDDGAC_28205 and yegT overlap by 4 nucleotides
JDDGAC_28195: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 5,402,923 to 5,403,669
yegW
JDDGAC_28200: yegV - Uncharacterized sugar kinase YegV, at 5,403,643 to 5,404,608
yegV
JDDGAC_28205: JDDGAC_28205 - ADP-ribosylglycohydrolase family protein, at 5,404,605 to 5,405,609
_28205
JDDGAC_28210: yegT - Putative nucleoside transporter YegT, at 5,405,606 to 5,406,883
yegT
Position (kb) 5404
5405
5406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5403.609 kb on + strand at 5403.644 kb on + strand at 5403.739 kb on + strand at 5403.743 kb on - strand, within yegV at 5403.875 kb on + strand, within yegV at 5403.952 kb on + strand, within yegV at 5403.953 kb on - strand, within yegV at 5404.068 kb on + strand, within yegV at 5404.069 kb on - strand, within yegV at 5404.069 kb on - strand, within yegV at 5404.328 kb on - strand, within yegV at 5404.357 kb on - strand, within yegV at 5404.591 kb on + strand at 5404.592 kb on - strand at 5404.631 kb on - strand at 5404.862 kb on + strand, within JDDGAC_28205 at 5405.190 kb on + strand, within JDDGAC_28205 at 5405.298 kb on + strand, within JDDGAC_28205 at 5405.423 kb on + strand, within JDDGAC_28205 at 5405.595 kb on - strand at 5405.888 kb on - strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.913 kb on + strand, within yegT at 5405.914 kb on - strand, within yegT at 5405.943 kb on + strand, within yegT at 5405.948 kb on + strand, within yegT at 5405.985 kb on + strand, within yegT at 5406.013 kb on - strand, within yegT at 5406.116 kb on + strand, within yegT at 5406.199 kb on - strand, within yegT at 5406.199 kb on - strand, within yegT at 5406.301 kb on + strand, within yegT at 5406.403 kb on + strand, within yegT at 5406.403 kb on + strand, within yegT at 5406.479 kb on - strand, within yegT at 5406.547 kb on + strand, within yegT at 5406.570 kb on + strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT at 5406.571 kb on - strand, within yegT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 5,403,609 + -1.6 5,403,644 + +0.7 5,403,739 + +1.0 5,403,743 - yegV JDDGAC_28200 0.10 -0.1 5,403,875 + yegV JDDGAC_28200 0.24 -0.4 5,403,952 + yegV JDDGAC_28200 0.32 +0.2 5,403,953 - yegV JDDGAC_28200 0.32 -2.3 5,404,068 + yegV JDDGAC_28200 0.44 +0.3 5,404,069 - yegV JDDGAC_28200 0.44 +0.8 5,404,069 - yegV JDDGAC_28200 0.44 -1.2 5,404,328 - yegV JDDGAC_28200 0.71 +0.2 5,404,357 - yegV JDDGAC_28200 0.74 -2.0 5,404,591 + +0.4 5,404,592 - +0.8 5,404,631 - -0.6 5,404,862 + JDDGAC_28205 0.26 -0.7 5,405,190 + JDDGAC_28205 0.58 -1.7 5,405,298 + JDDGAC_28205 0.69 -0.1 5,405,423 + JDDGAC_28205 0.81 -1.2 5,405,595 - +1.2 5,405,888 - yegT JDDGAC_28210 0.22 +1.6 5,405,913 + yegT JDDGAC_28210 0.24 +2.7 5,405,913 + yegT JDDGAC_28210 0.24 +0.8 5,405,913 + yegT JDDGAC_28210 0.24 +0.2 5,405,914 - yegT JDDGAC_28210 0.24 +0.1 5,405,943 + yegT JDDGAC_28210 0.26 -0.0 5,405,948 + yegT JDDGAC_28210 0.27 -0.7 5,405,985 + yegT JDDGAC_28210 0.30 +2.7 5,406,013 - yegT JDDGAC_28210 0.32 +0.3 5,406,116 + yegT JDDGAC_28210 0.40 +0.1 5,406,199 - yegT JDDGAC_28210 0.46 -2.2 5,406,199 - yegT JDDGAC_28210 0.46 -0.2 5,406,301 + yegT JDDGAC_28210 0.54 +0.2 5,406,403 + yegT JDDGAC_28210 0.62 -0.1 5,406,403 + yegT JDDGAC_28210 0.62 -1.2 5,406,479 - yegT JDDGAC_28210 0.68 +0.6 5,406,547 + yegT JDDGAC_28210 0.74 +0.1 5,406,570 + yegT JDDGAC_28210 0.75 +0.1 5,406,571 - yegT JDDGAC_28210 0.76 +0.8 5,406,571 - yegT JDDGAC_28210 0.76 +1.1 5,406,571 - yegT JDDGAC_28210 0.76 -2.0 5,406,571 - yegT JDDGAC_28210 0.76 -1.2
Or see this region's nucleotide sequence