Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28185 and yegX are separated by 64 nucleotides yegX and yegW are separated by 51 nucleotides yegW and yegV overlap by 27 nucleotides yegV and JDDGAC_28205 overlap by 4 nucleotides
JDDGAC_28185: JDDGAC_28185 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,401,188 to 5,401,988
_28185
JDDGAC_28190: yegX - Uncharacterized protein YegX, at 5,402,053 to 5,402,871
yegX
JDDGAC_28195: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 5,402,923 to 5,403,669
yegW
JDDGAC_28200: yegV - Uncharacterized sugar kinase YegV, at 5,403,643 to 5,404,608
yegV
JDDGAC_28205: JDDGAC_28205 - ADP-ribosylglycohydrolase family protein, at 5,404,605 to 5,405,609
_28205
Position (kb) 5402
5403
5404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5401.995 kb on + strand at 5401.996 kb on - strand at 5401.996 kb on - strand at 5401.996 kb on - strand at 5402.000 kb on + strand at 5402.001 kb on - strand at 5402.001 kb on - strand at 5402.001 kb on - strand at 5402.096 kb on + strand at 5402.185 kb on + strand, within yegX at 5402.185 kb on + strand, within yegX at 5402.185 kb on + strand, within yegX at 5402.185 kb on + strand, within yegX at 5402.186 kb on - strand, within yegX at 5402.186 kb on - strand, within yegX at 5402.198 kb on - strand, within yegX at 5402.198 kb on - strand, within yegX at 5402.232 kb on + strand, within yegX at 5402.232 kb on + strand, within yegX at 5402.246 kb on - strand, within yegX at 5402.333 kb on + strand, within yegX at 5402.437 kb on + strand, within yegX at 5402.438 kb on - strand, within yegX at 5402.537 kb on + strand, within yegX at 5402.635 kb on + strand, within yegX at 5402.707 kb on + strand, within yegX at 5402.708 kb on - strand, within yegX at 5402.711 kb on - strand, within yegX at 5402.777 kb on + strand, within yegX at 5402.886 kb on + strand at 5402.886 kb on + strand at 5403.000 kb on + strand, within yegW at 5403.081 kb on - strand, within yegW at 5403.199 kb on + strand, within yegW at 5403.609 kb on + strand at 5403.644 kb on + strand at 5403.739 kb on + strand at 5403.743 kb on - strand, within yegV at 5403.875 kb on + strand, within yegV at 5403.952 kb on + strand, within yegV at 5403.953 kb on - strand, within yegV at 5404.068 kb on + strand, within yegV at 5404.069 kb on - strand, within yegV at 5404.069 kb on - strand, within yegV at 5404.328 kb on - strand, within yegV at 5404.357 kb on - strand, within yegV at 5404.591 kb on + strand at 5404.592 kb on - strand at 5404.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 5,401,995 + +0.1 5,401,996 - -1.0 5,401,996 - +0.2 5,401,996 - +1.8 5,402,000 + -1.5 5,402,001 - +1.0 5,402,001 - -0.1 5,402,001 - -0.8 5,402,096 + +0.4 5,402,185 + yegX JDDGAC_28190 0.16 -0.2 5,402,185 + yegX JDDGAC_28190 0.16 -0.8 5,402,185 + yegX JDDGAC_28190 0.16 +0.1 5,402,185 + yegX JDDGAC_28190 0.16 +0.9 5,402,186 - yegX JDDGAC_28190 0.16 +0.9 5,402,186 - yegX JDDGAC_28190 0.16 -1.5 5,402,198 - yegX JDDGAC_28190 0.18 -0.2 5,402,198 - yegX JDDGAC_28190 0.18 -1.2 5,402,232 + yegX JDDGAC_28190 0.22 +0.3 5,402,232 + yegX JDDGAC_28190 0.22 -1.8 5,402,246 - yegX JDDGAC_28190 0.24 +1.3 5,402,333 + yegX JDDGAC_28190 0.34 +0.0 5,402,437 + yegX JDDGAC_28190 0.47 +0.1 5,402,438 - yegX JDDGAC_28190 0.47 -0.1 5,402,537 + yegX JDDGAC_28190 0.59 +0.2 5,402,635 + yegX JDDGAC_28190 0.71 +1.0 5,402,707 + yegX JDDGAC_28190 0.80 -0.1 5,402,708 - yegX JDDGAC_28190 0.80 -0.8 5,402,711 - yegX JDDGAC_28190 0.80 -0.8 5,402,777 + yegX JDDGAC_28190 0.88 +0.9 5,402,886 + +0.2 5,402,886 + +0.5 5,403,000 + yegW JDDGAC_28195 0.10 -0.4 5,403,081 - yegW JDDGAC_28195 0.21 -1.4 5,403,199 + yegW JDDGAC_28195 0.37 +0.9 5,403,609 + -1.6 5,403,644 + +0.7 5,403,739 + +1.0 5,403,743 - yegV JDDGAC_28200 0.10 -0.1 5,403,875 + yegV JDDGAC_28200 0.24 -0.4 5,403,952 + yegV JDDGAC_28200 0.32 +0.2 5,403,953 - yegV JDDGAC_28200 0.32 -2.3 5,404,068 + yegV JDDGAC_28200 0.44 +0.3 5,404,069 - yegV JDDGAC_28200 0.44 +0.8 5,404,069 - yegV JDDGAC_28200 0.44 -1.2 5,404,328 - yegV JDDGAC_28200 0.71 +0.2 5,404,357 - yegV JDDGAC_28200 0.74 -2.0 5,404,591 + +0.4 5,404,592 - +0.8 5,404,631 - -0.6
Or see this region's nucleotide sequence