Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25570 and JDDGAC_25575 are separated by 90 nucleotides JDDGAC_25575 and Arg_trna are separated by 203 nucleotides Arg_trna and JDDGAC_25585 are separated by 427 nucleotides JDDGAC_25585 and JDDGAC_25590 are separated by 14 nucleotides
JDDGAC_25570: JDDGAC_25570 - Terminase, at 4,886,709 to 4,888,184
_25570
JDDGAC_25575: JDDGAC_25575 - Phage protein (N4 Gp49/phage Sf6 gene 66) family, at 4,888,275 to 4,888,646
_25575
JDDGAC_25580: Arg_trna - tRNA-Arg(tct), at 4,888,850 to 4,888,926
_trna
JDDGAC_25585: JDDGAC_25585 - hypothetical protein, at 4,889,354 to 4,889,560
_25585
JDDGAC_25590: JDDGAC_25590 - Head to tail connecting protein, at 4,889,575 to 4,891,254
_25590
Position (kb) 4888
4889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4887.876 kb on - strand, within JDDGAC_25570 at 4887.993 kb on + strand, within JDDGAC_25570 at 4888.040 kb on + strand at 4888.084 kb on + strand at 4888.160 kb on + strand at 4888.160 kb on + strand at 4888.167 kb on + strand at 4888.183 kb on - strand at 4888.211 kb on + strand at 4888.212 kb on - strand at 4888.277 kb on - strand at 4888.288 kb on - strand at 4888.478 kb on - strand, within JDDGAC_25575 at 4888.483 kb on - strand, within JDDGAC_25575 at 4888.496 kb on + strand, within JDDGAC_25575 at 4888.509 kb on + strand, within JDDGAC_25575 at 4888.509 kb on + strand, within JDDGAC_25575 at 4888.509 kb on + strand, within JDDGAC_25575 at 4888.509 kb on + strand, within JDDGAC_25575 at 4888.510 kb on - strand, within JDDGAC_25575 at 4888.546 kb on + strand, within JDDGAC_25575 at 4888.563 kb on - strand, within JDDGAC_25575 at 4888.575 kb on - strand, within JDDGAC_25575 at 4888.587 kb on - strand, within JDDGAC_25575 at 4888.647 kb on - strand at 4888.647 kb on - strand at 4888.647 kb on - strand at 4888.705 kb on + strand at 4888.705 kb on + strand at 4888.706 kb on - strand at 4888.722 kb on + strand at 4888.779 kb on + strand at 4888.779 kb on + strand at 4888.780 kb on - strand at 4888.780 kb on - strand at 4888.889 kb on + strand, within Arg_trna at 4888.918 kb on + strand, within Arg_trna at 4888.979 kb on - strand at 4888.996 kb on + strand at 4888.997 kb on - strand at 4888.997 kb on - strand at 4889.161 kb on - strand at 4889.353 kb on + strand at 4889.353 kb on + strand at 4889.353 kb on + strand at 4889.353 kb on + strand at 4889.366 kb on - strand at 4889.483 kb on - strand, within JDDGAC_25585 at 4889.488 kb on + strand, within JDDGAC_25585 at 4889.531 kb on - strand, within JDDGAC_25585 at 4889.539 kb on + strand, within JDDGAC_25585 at 4889.589 kb on + strand at 4889.589 kb on + strand at 4889.671 kb on + strand at 4889.672 kb on - strand at 4889.672 kb on - strand at 4889.733 kb on + strand at 4889.734 kb on - strand at 4889.743 kb on - strand, within JDDGAC_25590 at 4889.871 kb on + strand, within JDDGAC_25590 at 4889.910 kb on + strand, within JDDGAC_25590 at 4889.910 kb on + strand, within JDDGAC_25590 at 4889.911 kb on - strand, within JDDGAC_25590 at 4889.919 kb on + strand, within JDDGAC_25590
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 4,887,876 - JDDGAC_25570 0.79 -1.8 4,887,993 + JDDGAC_25570 0.87 +0.2 4,888,040 + +2.3 4,888,084 + -0.4 4,888,160 + -1.6 4,888,160 + +0.9 4,888,167 + -0.7 4,888,183 - +1.1 4,888,211 + -0.9 4,888,212 - -0.5 4,888,277 - -2.7 4,888,288 - -4.3 4,888,478 - JDDGAC_25575 0.55 -0.7 4,888,483 - JDDGAC_25575 0.56 -2.6 4,888,496 + JDDGAC_25575 0.59 -3.1 4,888,509 + JDDGAC_25575 0.63 -1.2 4,888,509 + JDDGAC_25575 0.63 -0.3 4,888,509 + JDDGAC_25575 0.63 -0.9 4,888,509 + JDDGAC_25575 0.63 -0.4 4,888,510 - JDDGAC_25575 0.63 -1.1 4,888,546 + JDDGAC_25575 0.73 +0.5 4,888,563 - JDDGAC_25575 0.77 -1.4 4,888,575 - JDDGAC_25575 0.81 -3.0 4,888,587 - JDDGAC_25575 0.84 -0.8 4,888,647 - -2.8 4,888,647 - +0.2 4,888,647 - -0.2 4,888,705 + -2.1 4,888,705 + -2.4 4,888,706 - -0.5 4,888,722 + +0.0 4,888,779 + -1.4 4,888,779 + -1.1 4,888,780 - -1.3 4,888,780 - +0.8 4,888,889 + Arg_trna JDDGAC_25580 0.51 -1.1 4,888,918 + Arg_trna JDDGAC_25580 0.88 -1.9 4,888,979 - -3.3 4,888,996 + -4.0 4,888,997 - -2.0 4,888,997 - +0.4 4,889,161 - +0.1 4,889,353 + +1.4 4,889,353 + -0.5 4,889,353 + -1.1 4,889,353 + -2.2 4,889,366 - -0.1 4,889,483 - JDDGAC_25585 0.62 -2.4 4,889,488 + JDDGAC_25585 0.65 -2.4 4,889,531 - JDDGAC_25585 0.86 +0.7 4,889,539 + JDDGAC_25585 0.89 -4.3 4,889,589 + -1.4 4,889,589 + -3.1 4,889,671 + +0.1 4,889,672 - +0.1 4,889,672 - +0.8 4,889,733 + -1.6 4,889,734 - -1.3 4,889,743 - JDDGAC_25590 0.10 -1.5 4,889,871 + JDDGAC_25590 0.18 -0.2 4,889,910 + JDDGAC_25590 0.20 -1.4 4,889,910 + JDDGAC_25590 0.20 -3.3 4,889,911 - JDDGAC_25590 0.20 -1.1 4,889,919 + JDDGAC_25590 0.20 -1.6
Or see this region's nucleotide sequence