Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07065

Experiment: WM_TP11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydaS and JDDGAC_07060 are separated by 124 nucleotidesJDDGAC_07060 and JDDGAC_07065 are separated by 237 nucleotidesJDDGAC_07065 and JDDGAC_07070 are separated by 114 nucleotidesJDDGAC_07070 and JDDGAC_07075 are separated by 177 nucleotides JDDGAC_07055: ydaS - transcriptional regulator, at 1,219,327 to 1,219,650 ydaS JDDGAC_07060: JDDGAC_07060 - Prophage repressor RacR, at 1,219,775 to 1,220,251 _07060 JDDGAC_07065: JDDGAC_07065 - DUF1391 domain-containing protein, at 1,220,489 to 1,220,719 _07065 JDDGAC_07070: JDDGAC_07070 - hypothetical protein, at 1,220,834 to 1,221,349 _07070 JDDGAC_07075: JDDGAC_07075 - 3'-5' exoribonuclease, at 1,221,527 to 1,221,871 _07075 Position (kb) 1220 1221Strain fitness (log2 ratio) -2 -1 0 1 2at 1219.534 kb on + strand, within ydaSat 1219.570 kb on + strand, within ydaSat 1219.634 kb on + strandat 1219.635 kb on - strandat 1220.188 kb on + strand, within JDDGAC_07060at 1220.255 kb on + strandat 1220.255 kb on + strandat 1220.255 kb on + strandat 1220.278 kb on + strandat 1220.278 kb on + strandat 1220.432 kb on - strandat 1220.435 kb on + strandat 1220.572 kb on + strand, within JDDGAC_07065at 1220.651 kb on + strand, within JDDGAC_07065at 1220.730 kb on + strandat 1220.734 kb on + strandat 1220.734 kb on + strandat 1220.821 kb on + strandat 1220.822 kb on - strandat 1220.872 kb on + strandat 1220.885 kb on + strandat 1220.928 kb on + strand, within JDDGAC_07070at 1221.067 kb on - strand, within JDDGAC_07070at 1221.100 kb on + strand, within JDDGAC_07070at 1221.101 kb on - strand, within JDDGAC_07070at 1221.102 kb on + strand, within JDDGAC_07070at 1221.164 kb on + strand, within JDDGAC_07070at 1221.174 kb on + strand, within JDDGAC_07070at 1221.217 kb on + strand, within JDDGAC_07070at 1221.335 kb on + strandat 1221.485 kb on - strandat 1221.485 kb on - strandat 1221.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP11
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1,219,534 + ydaS JDDGAC_07055 0.64 +0.5
1,219,570 + ydaS JDDGAC_07055 0.75 -1.3
1,219,634 + +1.6
1,219,635 - +2.1
1,220,188 + JDDGAC_07060 0.87 -0.2
1,220,255 + -1.8
1,220,255 + -1.4
1,220,255 + -0.0
1,220,278 + -0.9
1,220,278 + -2.6
1,220,432 - -0.7
1,220,435 + +1.7
1,220,572 + JDDGAC_07065 0.36 -2.5
1,220,651 + JDDGAC_07065 0.70 -0.7
1,220,730 + +1.7
1,220,734 + +0.9
1,220,734 + -0.1
1,220,821 + +1.2
1,220,822 - +2.0
1,220,872 + +0.3
1,220,885 + +2.6
1,220,928 + JDDGAC_07070 0.18 +1.0
1,221,067 - JDDGAC_07070 0.45 +0.2
1,221,100 + JDDGAC_07070 0.52 +1.8
1,221,101 - JDDGAC_07070 0.52 +0.8
1,221,102 + JDDGAC_07070 0.52 +0.2
1,221,164 + JDDGAC_07070 0.64 +0.3
1,221,174 + JDDGAC_07070 0.66 +0.1
1,221,217 + JDDGAC_07070 0.74 -0.5
1,221,335 + +1.2
1,221,485 - +0.0
1,221,485 - +0.4
1,221,497 - +0.5

Or see this region's nucleotide sequence