Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaS and JDDGAC_07060 are separated by 124 nucleotides JDDGAC_07060 and JDDGAC_07065 are separated by 237 nucleotides JDDGAC_07065 and JDDGAC_07070 are separated by 114 nucleotides JDDGAC_07070 and JDDGAC_07075 are separated by 177 nucleotides
JDDGAC_07055: ydaS - transcriptional regulator, at 1,219,327 to 1,219,650
ydaS
JDDGAC_07060: JDDGAC_07060 - Prophage repressor RacR, at 1,219,775 to 1,220,251
_07060
JDDGAC_07065: JDDGAC_07065 - DUF1391 domain-containing protein, at 1,220,489 to 1,220,719
_07065
JDDGAC_07070: JDDGAC_07070 - hypothetical protein, at 1,220,834 to 1,221,349
_07070
JDDGAC_07075: JDDGAC_07075 - 3'-5' exoribonuclease, at 1,221,527 to 1,221,871
_07075
Position (kb)
1220
1221 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1219.534 kb on + strand, within ydaS at 1219.570 kb on + strand, within ydaS at 1219.634 kb on + strand at 1219.635 kb on - strand at 1220.188 kb on + strand, within JDDGAC_07060 at 1220.255 kb on + strand at 1220.255 kb on + strand at 1220.255 kb on + strand at 1220.278 kb on + strand at 1220.278 kb on + strand at 1220.432 kb on - strand at 1220.435 kb on + strand at 1220.572 kb on + strand, within JDDGAC_07065 at 1220.651 kb on + strand, within JDDGAC_07065 at 1220.730 kb on + strand at 1220.734 kb on + strand at 1220.734 kb on + strand at 1220.821 kb on + strand at 1220.822 kb on - strand at 1220.872 kb on + strand at 1220.885 kb on + strand at 1220.928 kb on + strand, within JDDGAC_07070 at 1221.067 kb on - strand, within JDDGAC_07070 at 1221.100 kb on + strand, within JDDGAC_07070 at 1221.101 kb on - strand, within JDDGAC_07070 at 1221.102 kb on + strand, within JDDGAC_07070 at 1221.164 kb on + strand, within JDDGAC_07070 at 1221.174 kb on + strand, within JDDGAC_07070 at 1221.217 kb on + strand, within JDDGAC_07070 at 1221.335 kb on + strand at 1221.485 kb on - strand at 1221.485 kb on - strand at 1221.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 1,219,534 + ydaS JDDGAC_07055 0.64 +0.5 1,219,570 + ydaS JDDGAC_07055 0.75 -1.3 1,219,634 + +1.6 1,219,635 - +2.1 1,220,188 + JDDGAC_07060 0.87 -0.2 1,220,255 + -1.8 1,220,255 + -1.4 1,220,255 + -0.0 1,220,278 + -0.9 1,220,278 + -2.6 1,220,432 - -0.7 1,220,435 + +1.7 1,220,572 + JDDGAC_07065 0.36 -2.5 1,220,651 + JDDGAC_07065 0.70 -0.7 1,220,730 + +1.7 1,220,734 + +0.9 1,220,734 + -0.1 1,220,821 + +1.2 1,220,822 - +2.0 1,220,872 + +0.3 1,220,885 + +2.6 1,220,928 + JDDGAC_07070 0.18 +1.0 1,221,067 - JDDGAC_07070 0.45 +0.2 1,221,100 + JDDGAC_07070 0.52 +1.8 1,221,101 - JDDGAC_07070 0.52 +0.8 1,221,102 + JDDGAC_07070 0.52 +0.2 1,221,164 + JDDGAC_07070 0.64 +0.3 1,221,174 + JDDGAC_07070 0.66 +0.1 1,221,217 + JDDGAC_07070 0.74 -0.5 1,221,335 + +1.2 1,221,485 - +0.0 1,221,485 - +0.4 1,221,497 - +0.5
Or see this region's nucleotide sequence