Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05515 and JDDGAC_05520 are separated by 12 nucleotides JDDGAC_05520 and JDDGAC_05525 are separated by 1 nucleotides JDDGAC_05525 and JDDGAC_05530 overlap by 4 nucleotides JDDGAC_05530 and JDDGAC_05535 are separated by 4 nucleotides JDDGAC_05535 and gam are separated by 11 nucleotides gam and JDDGAC_05545 are separated by 97 nucleotides
JDDGAC_05515: JDDGAC_05515 - hypothetical protein, at 971,386 to 971,607
_05515
JDDGAC_05520: JDDGAC_05520 - hypothetical protein, at 971,620 to 971,874
_05520
JDDGAC_05525: JDDGAC_05525 - host nuclease inhibitor protein, at 971,876 to 972,157
_05525
JDDGAC_05530: JDDGAC_05530 - hypothetical protein, at 972,154 to 972,426
_05530
JDDGAC_05535: JDDGAC_05535 - hypothetical protein, at 972,431 to 972,724
_05535
JDDGAC_05540: gam - host-nuclease inhibitor protein Gam, at 972,736 to 973,266
gam
JDDGAC_05545: JDDGAC_05545 - hypothetical protein, at 973,364 to 973,906
_05545
Position (kb) 972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 971.618 kb on - strand at 971.625 kb on + strand at 971.958 kb on + strand, within JDDGAC_05525 at 972.184 kb on + strand, within JDDGAC_05530 at 972.248 kb on + strand, within JDDGAC_05530 at 972.393 kb on + strand, within JDDGAC_05530 at 972.550 kb on + strand, within JDDGAC_05535 at 972.592 kb on + strand, within JDDGAC_05535 at 972.700 kb on + strand at 972.701 kb on - strand at 973.206 kb on + strand, within gam at 973.305 kb on - strand at 973.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 971,618 - -0.1 971,625 + -1.0 971,958 + JDDGAC_05525 0.29 +0.7 972,184 + JDDGAC_05530 0.11 -0.4 972,248 + JDDGAC_05530 0.34 +2.1 972,393 + JDDGAC_05530 0.88 +1.4 972,550 + JDDGAC_05535 0.40 +0.4 972,592 + JDDGAC_05535 0.55 -2.7 972,700 + -0.9 972,701 - -0.5 973,206 + gam JDDGAC_05540 0.89 +0.0 973,305 - +0.3 973,349 + -0.5
Or see this region's nucleotide sequence