Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcM and smrA are separated by 20 nucleotides smrA and abgR are separated by 329 nucleotides abgR and abgA are separated by 175 nucleotides
JDDGAC_04745: dgcM - diguanylate cyclase DgcM, at 821,967 to 823,199
dgcM
JDDGAC_04750: smrA - DNA endonuclease SmrA, at 823,220 to 823,783
smrA
JDDGAC_04760: abgR - LysR family transcriptional regulator, at 824,113 to 825,021
abgR
JDDGAC_04765: abgA - p-aminobenzoyl-glutamate hydrolase subunit AbgA, at 825,197 to 826,507
abgA
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.156 kb on - strand at 823.277 kb on - strand, within smrA at 823.277 kb on - strand, within smrA at 823.291 kb on - strand, within smrA at 823.374 kb on + strand, within smrA at 823.374 kb on + strand, within smrA at 823.403 kb on - strand, within smrA at 823.403 kb on - strand, within smrA at 823.787 kb on - strand at 823.845 kb on + strand at 823.845 kb on + strand at 823.867 kb on - strand at 823.867 kb on - strand at 823.867 kb on - strand at 823.933 kb on + strand at 823.933 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.944 kb on - strand at 823.946 kb on - strand at 823.983 kb on + strand at 823.983 kb on + strand at 824.069 kb on + strand at 824.184 kb on + strand at 824.353 kb on + strand, within abgR at 824.411 kb on + strand, within abgR at 824.567 kb on + strand, within abgR at 824.568 kb on - strand, within abgR at 824.568 kb on - strand, within abgR at 824.568 kb on - strand, within abgR at 824.568 kb on - strand, within abgR at 824.572 kb on - strand, within abgR at 824.638 kb on - strand, within abgR at 824.645 kb on - strand, within abgR at 824.681 kb on - strand, within abgR at 824.800 kb on - strand, within abgR at 824.800 kb on - strand, within abgR at 824.910 kb on + strand, within abgR at 825.040 kb on + strand at 825.155 kb on - strand at 825.177 kb on + strand at 825.269 kb on + strand at 825.408 kb on + strand, within abgA at 825.409 kb on - strand, within abgA at 825.616 kb on + strand, within abgA at 825.617 kb on - strand, within abgA at 825.655 kb on + strand, within abgA at 825.751 kb on + strand, within abgA at 825.790 kb on - strand, within abgA at 825.808 kb on + strand, within abgA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 823,156 - -0.8 823,277 - smrA JDDGAC_04750 0.10 +0.9 823,277 - smrA JDDGAC_04750 0.10 -1.4 823,291 - smrA JDDGAC_04750 0.13 +0.8 823,374 + smrA JDDGAC_04750 0.27 -0.3 823,374 + smrA JDDGAC_04750 0.27 +2.3 823,403 - smrA JDDGAC_04750 0.32 +2.1 823,403 - smrA JDDGAC_04750 0.32 -1.4 823,787 - -0.5 823,845 + +0.6 823,845 + -0.3 823,867 - +0.6 823,867 - +0.1 823,867 - -1.4 823,933 + +0.3 823,933 + -1.0 823,938 + +0.9 823,938 + -1.4 823,939 - +0.1 823,939 - +0.8 823,944 - +0.7 823,946 - +0.0 823,983 + -0.4 823,983 + -2.0 824,069 + -0.3 824,184 + -2.8 824,353 + abgR JDDGAC_04760 0.26 -2.1 824,411 + abgR JDDGAC_04760 0.33 -2.2 824,567 + abgR JDDGAC_04760 0.50 -2.2 824,568 - abgR JDDGAC_04760 0.50 +1.9 824,568 - abgR JDDGAC_04760 0.50 -1.0 824,568 - abgR JDDGAC_04760 0.50 +0.1 824,568 - abgR JDDGAC_04760 0.50 -0.2 824,572 - abgR JDDGAC_04760 0.50 +0.9 824,638 - abgR JDDGAC_04760 0.58 -0.4 824,645 - abgR JDDGAC_04760 0.59 -1.1 824,681 - abgR JDDGAC_04760 0.62 -1.6 824,800 - abgR JDDGAC_04760 0.76 +0.1 824,800 - abgR JDDGAC_04760 0.76 -2.4 824,910 + abgR JDDGAC_04760 0.88 +1.6 825,040 + +0.5 825,155 - +0.2 825,177 + -0.0 825,269 + -1.6 825,408 + abgA JDDGAC_04765 0.16 -1.3 825,409 - abgA JDDGAC_04765 0.16 -0.9 825,616 + abgA JDDGAC_04765 0.32 +0.4 825,617 - abgA JDDGAC_04765 0.32 +2.1 825,655 + abgA JDDGAC_04765 0.35 +0.4 825,751 + abgA JDDGAC_04765 0.42 +1.4 825,790 - abgA JDDGAC_04765 0.45 +1.1 825,808 + abgA JDDGAC_04765 0.47 +0.7
Or see this region's nucleotide sequence