Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_04540 and JDDGAC_04560 are separated by 273 nucleotides JDDGAC_04560 and JDDGAC_04565 overlap by 4 nucleotides JDDGAC_04565 and JDDGAC_04570 overlap by 1 nucleotides JDDGAC_04570 and JDDGAC_04575 are separated by 71 nucleotides
JDDGAC_04540: JDDGAC_04540 - ORF6N domain-containing protein, at 799,926 to 800,507
_04540
JDDGAC_04560: JDDGAC_04560 - DUF1133 domain-containing protein, at 800,781 to 801,335
_04560
JDDGAC_04565: JDDGAC_04565 - DUF1364 domain-containing protein, at 801,332 to 801,622
_04565
JDDGAC_04570: JDDGAC_04570 - DUF1367 domain-containing protein, at 801,622 to 802,221
_04570
JDDGAC_04575: JDDGAC_04575 - Bacteriophage cohesive ends, at 802,293 to 802,505
_04575
Position (kb) 801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 800.448 kb on - strand, within JDDGAC_04540 at 800.507 kb on + strand at 800.577 kb on - strand at 800.663 kb on - strand at 800.663 kb on - strand at 800.722 kb on - strand at 800.758 kb on - strand at 800.841 kb on - strand, within JDDGAC_04560 at 800.862 kb on + strand, within JDDGAC_04560 at 800.862 kb on + strand, within JDDGAC_04560 at 800.959 kb on + strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 801.230 kb on - strand, within JDDGAC_04560 at 801.249 kb on - strand, within JDDGAC_04560 at 801.249 kb on - strand, within JDDGAC_04560 at 801.253 kb on - strand, within JDDGAC_04560 at 801.443 kb on + strand, within JDDGAC_04565 at 801.481 kb on + strand, within JDDGAC_04565 at 801.526 kb on - strand, within JDDGAC_04565 at 801.711 kb on + strand, within JDDGAC_04570 at 801.726 kb on - strand, within JDDGAC_04570 at 801.819 kb on - strand, within JDDGAC_04570 at 801.946 kb on - strand, within JDDGAC_04570 at 802.041 kb on - strand, within JDDGAC_04570 at 802.088 kb on + strand, within JDDGAC_04570 at 802.089 kb on - strand, within JDDGAC_04570 at 802.210 kb on + strand at 802.243 kb on + strand at 802.269 kb on - strand at 802.269 kb on - strand at 802.271 kb on + strand at 802.390 kb on - strand, within JDDGAC_04575 at 802.394 kb on - strand, within JDDGAC_04575 at 802.439 kb on + strand, within JDDGAC_04575 at 802.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 800,448 - JDDGAC_04540 0.90 +1.0 800,507 + -1.1 800,577 - +0.8 800,663 - -1.8 800,663 - -0.5 800,722 - +0.7 800,758 - -0.3 800,841 - JDDGAC_04560 0.11 +0.0 800,862 + JDDGAC_04560 0.15 -0.3 800,862 + JDDGAC_04560 0.15 -0.6 800,959 + JDDGAC_04560 0.32 +2.8 800,976 - JDDGAC_04560 0.35 -1.7 800,976 - JDDGAC_04560 0.35 -0.8 800,976 - JDDGAC_04560 0.35 -0.2 801,230 - JDDGAC_04560 0.81 +1.2 801,249 - JDDGAC_04560 0.84 -0.5 801,249 - JDDGAC_04560 0.84 -0.4 801,253 - JDDGAC_04560 0.85 +2.1 801,443 + JDDGAC_04565 0.38 +0.2 801,481 + JDDGAC_04565 0.51 -1.0 801,526 - JDDGAC_04565 0.67 -0.2 801,711 + JDDGAC_04570 0.15 +0.3 801,726 - JDDGAC_04570 0.17 +0.3 801,819 - JDDGAC_04570 0.33 +0.2 801,946 - JDDGAC_04570 0.54 -0.2 802,041 - JDDGAC_04570 0.70 +0.6 802,088 + JDDGAC_04570 0.78 -1.5 802,089 - JDDGAC_04570 0.78 -0.3 802,210 + +0.2 802,243 + +0.6 802,269 - +1.1 802,269 - -1.9 802,271 + +0.0 802,390 - JDDGAC_04575 0.46 +1.1 802,394 - JDDGAC_04575 0.47 -0.6 802,439 + JDDGAC_04575 0.69 -0.9 802,527 - +0.9
Or see this region's nucleotide sequence