Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02100

Experiment: WM_TP11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrS and pdxY are separated by 61 nucleotidespdxY and gstA are separated by 43 nucleotidesgstA and dtpA are separated by 105 nucleotides JDDGAC_02090: tyrS - tyrosine--tRNA ligase, at 373,604 to 374,878 tyrS JDDGAC_02095: pdxY - pyridoxal kinase PdxY, at 374,940 to 375,800 pdxY JDDGAC_02100: gstA - glutathione transferase GstA, at 375,844 to 376,449 gstA JDDGAC_02105: dtpA - dipeptide/tripeptide permease DtpA, at 376,555 to 378,057 dtpA Position (kb) 375 376 377Strain fitness (log2 ratio) -2 -1 0 1 2 3at 374.926 kb on - strandat 375.183 kb on + strand, within pdxYat 375.184 kb on - strand, within pdxYat 375.391 kb on + strand, within pdxYat 375.409 kb on + strand, within pdxYat 375.554 kb on + strand, within pdxYat 375.691 kb on - strand, within pdxYat 375.758 kb on + strandat 375.778 kb on - strandat 375.803 kb on + strandat 375.846 kb on - strandat 375.851 kb on - strandat 375.954 kb on - strand, within gstAat 375.981 kb on - strand, within gstAat 376.295 kb on - strand, within gstAat 376.322 kb on + strand, within gstAat 376.323 kb on - strand, within gstAat 376.474 kb on + strandat 376.475 kb on - strandat 376.479 kb on + strandat 376.484 kb on + strandat 376.752 kb on - strand, within dtpAat 376.913 kb on - strand, within dtpAat 377.405 kb on + strand, within dtpA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP11
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374,926 - -0.6
375,183 + pdxY JDDGAC_02095 0.28 -0.2
375,184 - pdxY JDDGAC_02095 0.28 -0.6
375,391 + pdxY JDDGAC_02095 0.52 -0.8
375,409 + pdxY JDDGAC_02095 0.54 +0.3
375,554 + pdxY JDDGAC_02095 0.71 -1.3
375,691 - pdxY JDDGAC_02095 0.87 -0.3
375,758 + -1.2
375,778 - +0.5
375,803 + -1.9
375,846 - -0.4
375,851 - +0.6
375,954 - gstA JDDGAC_02100 0.18 -0.9
375,981 - gstA JDDGAC_02100 0.23 -0.8
376,295 - gstA JDDGAC_02100 0.74 -0.2
376,322 + gstA JDDGAC_02100 0.79 -1.0
376,323 - gstA JDDGAC_02100 0.79 -1.6
376,474 + +1.3
376,475 - +0.6
376,479 + +3.5
376,484 + +1.1
376,752 - dtpA JDDGAC_02105 0.13 +0.3
376,913 - dtpA JDDGAC_02105 0.24 -0.7
377,405 + dtpA JDDGAC_02105 0.57 +0.4

Or see this region's nucleotide sequence