Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01870

Experiment: WM_TP11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpykF and fumD are separated by 556 nucleotidesfumD and ydhY are separated by 455 nucleotides JDDGAC_01865: pykF - pyruvate kinase PykF, at 332,418 to 333,830 pykF JDDGAC_01870: fumD - fumarate hydratase FumD, at 334,387 to 334,596 fumD JDDGAC_01875: ydhY - ferredoxin-like protein, at 335,052 to 335,678 ydhY Position (kb) 334 335Strain fitness (log2 ratio) -2 -1 0 1 2 3at 333.503 kb on - strand, within pykFat 333.847 kb on - strandat 333.934 kb on - strandat 334.157 kb on + strandat 334.234 kb on + strandat 334.234 kb on + strandat 334.257 kb on + strandat 334.262 kb on - strandat 334.349 kb on + strandat 334.360 kb on - strandat 334.371 kb on + strandat 334.489 kb on - strand, within fumDat 334.508 kb on + strand, within fumDat 334.700 kb on - strandat 334.986 kb on - strandat 335.074 kb on + strandat 335.186 kb on + strand, within ydhYat 335.216 kb on + strand, within ydhYat 335.285 kb on + strand, within ydhYat 335.327 kb on + strand, within ydhYat 335.471 kb on + strand, within ydhYat 335.472 kb on - strand, within ydhYat 335.495 kb on + strand, within ydhYat 335.496 kb on - strand, within ydhYat 335.519 kb on + strand, within ydhYat 335.519 kb on + strand, within ydhYat 335.537 kb on + strand, within ydhYat 335.569 kb on + strand, within ydhY

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP11
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333,503 - pykF JDDGAC_01865 0.77 +2.4
333,847 - +0.6
333,934 - +0.2
334,157 + -0.4
334,234 + -1.2
334,234 + +1.0
334,257 + +1.9
334,262 - -0.5
334,349 + +2.8
334,360 - +0.9
334,371 + -0.9
334,489 - fumD JDDGAC_01870 0.49 -1.3
334,508 + fumD JDDGAC_01870 0.58 -0.6
334,700 - -0.5
334,986 - -1.3
335,074 + -0.5
335,186 + ydhY JDDGAC_01875 0.21 -0.1
335,216 + ydhY JDDGAC_01875 0.26 +2.0
335,285 + ydhY JDDGAC_01875 0.37 -0.3
335,327 + ydhY JDDGAC_01875 0.44 +0.2
335,471 + ydhY JDDGAC_01875 0.67 -0.2
335,472 - ydhY JDDGAC_01875 0.67 -0.8
335,495 + ydhY JDDGAC_01875 0.71 +0.8
335,496 - ydhY JDDGAC_01875 0.71 +0.8
335,519 + ydhY JDDGAC_01875 0.74 -0.4
335,519 + ydhY JDDGAC_01875 0.74 -2.2
335,537 + ydhY JDDGAC_01875 0.77 -1.1
335,569 + ydhY JDDGAC_01875 0.82 -0.1

Or see this region's nucleotide sequence