Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01680

Experiment: WM_TP11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbtuC and btuE are separated by 62 nucleotidesbtuE and btuD overlap by 1 nucleotidesbtuD and nlpC are separated by 77 nucleotides JDDGAC_01675: btuC - vitamin B12 ABC transporter permease BtuC, at 294,374 to 295,354 btuC JDDGAC_01680: btuE - bifunctional thioredoxin/glutathione peroxidase, at 295,417 to 295,968 btuE JDDGAC_01685: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 295,968 to 296,717 btuD JDDGAC_01690: nlpC - putative endopeptidase NlpC, at 296,795 to 297,259 nlpC Position (kb) 295 296Strain fitness (log2 ratio) -2 -1 0 1 2at 294.551 kb on - strand, within btuCat 294.841 kb on + strand, within btuCat 294.849 kb on + strand, within btuCat 294.850 kb on - strand, within btuCat 294.863 kb on - strand, within btuCat 294.866 kb on + strand, within btuCat 294.888 kb on + strand, within btuCat 295.010 kb on - strand, within btuCat 295.159 kb on + strand, within btuCat 295.197 kb on + strand, within btuCat 295.286 kb on - strandat 295.377 kb on + strandat 295.544 kb on - strand, within btuEat 295.560 kb on + strand, within btuEat 295.660 kb on + strand, within btuEat 295.660 kb on + strand, within btuEat 295.665 kb on + strand, within btuEat 295.966 kb on + strandat 295.973 kb on + strandat 295.973 kb on + strandat 295.987 kb on + strandat 296.088 kb on - strand, within btuDat 296.092 kb on + strand, within btuDat 296.092 kb on + strand, within btuDat 296.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP11
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294,551 - btuC JDDGAC_01675 0.18 -0.4
294,841 + btuC JDDGAC_01675 0.48 +0.1
294,849 + btuC JDDGAC_01675 0.48 +0.9
294,850 - btuC JDDGAC_01675 0.49 -1.4
294,863 - btuC JDDGAC_01675 0.50 -1.2
294,866 + btuC JDDGAC_01675 0.50 +0.4
294,888 + btuC JDDGAC_01675 0.52 -0.4
295,010 - btuC JDDGAC_01675 0.65 +0.4
295,159 + btuC JDDGAC_01675 0.80 -1.8
295,197 + btuC JDDGAC_01675 0.84 -0.8
295,286 - +1.0
295,377 + -0.1
295,544 - btuE JDDGAC_01680 0.23 -1.5
295,560 + btuE JDDGAC_01680 0.26 +0.6
295,660 + btuE JDDGAC_01680 0.44 -0.2
295,660 + btuE JDDGAC_01680 0.44 -1.5
295,665 + btuE JDDGAC_01680 0.45 +1.0
295,966 + +2.4
295,973 + +0.4
295,973 + +0.1
295,987 + -0.1
296,088 - btuD JDDGAC_01685 0.16 -0.9
296,092 + btuD JDDGAC_01685 0.17 -0.3
296,092 + btuD JDDGAC_01685 0.17 +2.3
296,727 + +2.7

Or see this region's nucleotide sequence