Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynjA and ydjZ overlap by 1 nucleotides ydjZ and ydjY are separated by 14 nucleotides ydjY and ydjX are separated by 4 nucleotides ydjX and xthA are separated by 166 nucleotides
JDDGAC_01455: ynjA - Uncharacterized protein YnjA, at 253,664 to 254,212
ynjA
JDDGAC_01460: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 254,212 to 254,919
ydjZ
JDDGAC_01465: ydjY - Uncharacterized protein YdjY, at 254,934 to 255,611
ydjY
JDDGAC_01470: ydjX - TVP38/TMEM64 family membrane protein YdjX, at 255,616 to 256,326
ydjX
JDDGAC_01475: xthA - exodeoxyribonuclease III, at 256,493 to 257,299
xthA
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.028 kb on - strand, within ynjA at 254.089 kb on - strand, within ynjA at 254.089 kb on - strand, within ynjA at 254.287 kb on - strand, within ydjZ at 254.346 kb on - strand, within ydjZ at 254.352 kb on + strand, within ydjZ at 254.426 kb on + strand, within ydjZ at 254.427 kb on - strand, within ydjZ at 254.427 kb on - strand, within ydjZ at 254.522 kb on - strand, within ydjZ at 254.764 kb on + strand, within ydjZ at 254.764 kb on + strand, within ydjZ at 254.764 kb on + strand, within ydjZ at 254.765 kb on - strand, within ydjZ at 255.038 kb on - strand, within ydjY at 255.043 kb on + strand, within ydjY at 255.044 kb on - strand, within ydjY at 255.044 kb on - strand, within ydjY at 255.044 kb on - strand, within ydjY at 255.078 kb on - strand, within ydjY at 255.357 kb on - strand, within ydjY at 255.387 kb on - strand, within ydjY at 255.496 kb on + strand, within ydjY at 255.598 kb on + strand at 255.617 kb on + strand at 255.617 kb on + strand at 255.639 kb on + strand at 255.690 kb on - strand, within ydjX at 255.750 kb on + strand, within ydjX at 255.801 kb on - strand, within ydjX at 255.804 kb on + strand, within ydjX at 255.804 kb on + strand, within ydjX at 255.913 kb on + strand, within ydjX at 256.079 kb on - strand, within ydjX at 256.173 kb on + strand, within ydjX at 256.173 kb on + strand, within ydjX at 256.174 kb on - strand, within ydjX at 256.175 kb on + strand, within ydjX at 256.340 kb on - strand at 256.353 kb on + strand at 256.393 kb on + strand at 256.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 254,028 - ynjA JDDGAC_01455 0.66 -0.4 254,089 - ynjA JDDGAC_01455 0.77 +1.7 254,089 - ynjA JDDGAC_01455 0.77 -1.2 254,287 - ydjZ JDDGAC_01460 0.11 +0.6 254,346 - ydjZ JDDGAC_01460 0.19 +2.6 254,352 + ydjZ JDDGAC_01460 0.20 -0.9 254,426 + ydjZ JDDGAC_01460 0.30 +1.6 254,427 - ydjZ JDDGAC_01460 0.30 +0.0 254,427 - ydjZ JDDGAC_01460 0.30 +0.1 254,522 - ydjZ JDDGAC_01460 0.44 +0.2 254,764 + ydjZ JDDGAC_01460 0.78 +0.7 254,764 + ydjZ JDDGAC_01460 0.78 +0.5 254,764 + ydjZ JDDGAC_01460 0.78 -0.3 254,765 - ydjZ JDDGAC_01460 0.78 +1.6 255,038 - ydjY JDDGAC_01465 0.15 -0.1 255,043 + ydjY JDDGAC_01465 0.16 -2.1 255,044 - ydjY JDDGAC_01465 0.16 +2.0 255,044 - ydjY JDDGAC_01465 0.16 -1.4 255,044 - ydjY JDDGAC_01465 0.16 +2.6 255,078 - ydjY JDDGAC_01465 0.21 +0.0 255,357 - ydjY JDDGAC_01465 0.62 -1.7 255,387 - ydjY JDDGAC_01465 0.67 -0.7 255,496 + ydjY JDDGAC_01465 0.83 -1.8 255,598 + -1.9 255,617 + +0.0 255,617 + +1.9 255,639 + +1.4 255,690 - ydjX JDDGAC_01470 0.10 -1.0 255,750 + ydjX JDDGAC_01470 0.19 -1.3 255,801 - ydjX JDDGAC_01470 0.26 +1.2 255,804 + ydjX JDDGAC_01470 0.26 -0.1 255,804 + ydjX JDDGAC_01470 0.26 +1.8 255,913 + ydjX JDDGAC_01470 0.42 +0.1 256,079 - ydjX JDDGAC_01470 0.65 +1.6 256,173 + ydjX JDDGAC_01470 0.78 -1.5 256,173 + ydjX JDDGAC_01470 0.78 -0.3 256,174 - ydjX JDDGAC_01470 0.78 +0.5 256,175 + ydjX JDDGAC_01470 0.79 -0.6 256,340 - +1.0 256,353 + +0.1 256,393 + -0.2 256,424 - +0.6
Or see this region's nucleotide sequence