Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01205

Experiment: WM_TP11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdmlA and dmlR are separated by 102 nucleotidesdmlR and leuE are separated by 126 nucleotidesleuE and yeaR are separated by 172 nucleotides JDDGAC_01200: dmlA - multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase, at 204,638 to 205,723 dmlA JDDGAC_01205: dmlR - DNA-binding transcriptional regulator DmlR, at 205,826 to 206,749 dmlR JDDGAC_01210: leuE - leucine efflux protein LeuE, at 206,876 to 207,514 leuE JDDGAC_01215: yeaR - Uncharacterized protein YeaR, at 207,687 to 208,046 yeaR Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 204.856 kb on - strand, within dmlAat 205.087 kb on - strand, within dmlAat 205.175 kb on - strand, within dmlAat 205.465 kb on + strand, within dmlAat 205.506 kb on + strand, within dmlAat 205.506 kb on + strand, within dmlAat 205.507 kb on - strand, within dmlAat 205.525 kb on + strand, within dmlAat 205.770 kb on - strandat 205.771 kb on + strandat 205.772 kb on - strandat 206.030 kb on + strand, within dmlRat 206.377 kb on - strand, within dmlRat 206.498 kb on - strand, within dmlRat 206.498 kb on - strand, within dmlRat 206.804 kb on + strandat 206.872 kb on + strandat 207.028 kb on + strand, within leuEat 207.275 kb on + strand, within leuEat 207.307 kb on + strand, within leuEat 207.374 kb on + strand, within leuEat 207.420 kb on + strand, within leuEat 207.420 kb on + strand, within leuEat 207.420 kb on + strand, within leuEat 207.421 kb on - strand, within leuEat 207.424 kb on + strand, within leuE

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP11
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204,856 - dmlA JDDGAC_01200 0.20 -0.8
205,087 - dmlA JDDGAC_01200 0.41 -0.1
205,175 - dmlA JDDGAC_01200 0.49 +3.4
205,465 + dmlA JDDGAC_01200 0.76 +0.5
205,506 + dmlA JDDGAC_01200 0.80 -0.3
205,506 + dmlA JDDGAC_01200 0.80 +1.3
205,507 - dmlA JDDGAC_01200 0.80 -0.7
205,525 + dmlA JDDGAC_01200 0.82 -0.6
205,770 - -1.7
205,771 + +0.8
205,772 - +0.0
206,030 + dmlR JDDGAC_01205 0.22 +0.3
206,377 - dmlR JDDGAC_01205 0.60 +0.2
206,498 - dmlR JDDGAC_01205 0.73 -1.6
206,498 - dmlR JDDGAC_01205 0.73 +0.6
206,804 + +0.0
206,872 + -1.2
207,028 + leuE JDDGAC_01210 0.24 +0.2
207,275 + leuE JDDGAC_01210 0.62 +0.3
207,307 + leuE JDDGAC_01210 0.67 -0.5
207,374 + leuE JDDGAC_01210 0.78 -1.1
207,420 + leuE JDDGAC_01210 0.85 -2.4
207,420 + leuE JDDGAC_01210 0.85 -0.7
207,420 + leuE JDDGAC_01210 0.85 -0.5
207,421 - leuE JDDGAC_01210 0.85 -0.7
207,424 + leuE JDDGAC_01210 0.86 -1.3

Or see this region's nucleotide sequence