Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmA and mntP overlap by 4 nucleotides mntP and JDDGAC_01085 overlap by 4 nucleotides JDDGAC_01085 and JDDGAC_01090 are separated by 310 nucleotides JDDGAC_01090 and manZ are separated by 54 nucleotides
JDDGAC_01075: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 180,349 to 181,158
rlmA
JDDGAC_01080: mntP - manganese efflux pump MntP, at 181,155 to 181,721
mntP
JDDGAC_01085: JDDGAC_01085 - Membrane protein, at 181,718 to 181,840
_01085
JDDGAC_01090: JDDGAC_01090 - UPF0266 membrane protein YobD, at 182,151 to 182,609
_01090
JDDGAC_01095: manZ - PTS mannose transporter subunit IID, at 182,664 to 183,515
manZ
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.806 kb on + strand, within rlmA at 180.806 kb on + strand, within rlmA at 180.806 kb on + strand, within rlmA at 180.810 kb on + strand, within rlmA at 180.810 kb on + strand, within rlmA at 180.811 kb on - strand, within rlmA at 180.839 kb on + strand, within rlmA at 181.153 kb on + strand at 181.239 kb on - strand, within mntP at 181.283 kb on + strand, within mntP at 181.284 kb on - strand, within mntP at 181.716 kb on - strand at 181.748 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.873 kb on + strand at 181.909 kb on - strand at 182.363 kb on - strand, within JDDGAC_01090 at 182.403 kb on + strand, within JDDGAC_01090 at 182.434 kb on + strand, within JDDGAC_01090 at 182.548 kb on + strand, within JDDGAC_01090 at 182.654 kb on + strand at 182.654 kb on + strand at 182.763 kb on - strand, within manZ at 182.817 kb on - strand, within manZ at 182.829 kb on - strand, within manZ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 180,806 + rlmA JDDGAC_01075 0.56 +0.9 180,806 + rlmA JDDGAC_01075 0.56 -0.2 180,806 + rlmA JDDGAC_01075 0.56 -0.2 180,810 + rlmA JDDGAC_01075 0.57 +1.0 180,810 + rlmA JDDGAC_01075 0.57 +0.3 180,811 - rlmA JDDGAC_01075 0.57 -1.0 180,839 + rlmA JDDGAC_01075 0.60 -0.5 181,153 + -0.6 181,239 - mntP JDDGAC_01080 0.15 +2.6 181,283 + mntP JDDGAC_01080 0.23 -0.2 181,284 - mntP JDDGAC_01080 0.23 +1.7 181,716 - +1.0 181,748 - JDDGAC_01085 0.24 -1.6 181,780 - JDDGAC_01085 0.50 -1.6 181,780 - JDDGAC_01085 0.50 -1.3 181,780 - JDDGAC_01085 0.50 +0.3 181,873 + -2.6 181,909 - +0.6 182,363 - JDDGAC_01090 0.46 -0.6 182,403 + JDDGAC_01090 0.55 +1.6 182,434 + JDDGAC_01090 0.62 +0.9 182,548 + JDDGAC_01090 0.86 -0.9 182,654 + -0.5 182,654 + +1.0 182,763 - manZ JDDGAC_01095 0.12 +1.3 182,817 - manZ JDDGAC_01095 0.18 +1.7 182,829 - manZ JDDGAC_01095 0.19 +0.2
Or see this region's nucleotide sequence