Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmoB and cmoA overlap by 4 nucleotides cmoA and yecN are separated by 40 nucleotides yecN and yecE are separated by 52 nucleotides
JDDGAC_00795: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 132,896 to 133,867
cmoB
JDDGAC_00800: cmoA - carboxy-S-adenosyl-L-methionine synthase CmoA, at 133,864 to 134,607
cmoA
JDDGAC_00805: yecN - Inner membrane protein YecN, at 134,648 to 135,043
yecN
JDDGAC_00810: yecE - UPF0759 protein YecE, at 135,096 to 135,914
yecE
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.886 kb on + strand at 133.126 kb on + strand, within cmoB at 133.126 kb on + strand, within cmoB at 133.332 kb on - strand, within cmoB at 133.505 kb on + strand, within cmoB at 133.579 kb on - strand, within cmoB at 133.685 kb on - strand, within cmoB at 133.886 kb on - strand at 133.965 kb on + strand, within cmoA at 134.055 kb on + strand, within cmoA at 134.276 kb on - strand, within cmoA at 134.305 kb on - strand, within cmoA at 134.305 kb on - strand, within cmoA at 134.462 kb on - strand, within cmoA at 134.481 kb on + strand, within cmoA at 134.640 kb on - strand at 134.680 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.683 kb on - strand at 134.683 kb on - strand at 134.778 kb on + strand, within yecN at 134.818 kb on + strand, within yecN at 134.819 kb on - strand, within yecN at 134.819 kb on - strand, within yecN at 134.884 kb on + strand, within yecN at 134.884 kb on + strand, within yecN at 134.885 kb on - strand, within yecN at 134.886 kb on + strand, within yecN at 134.886 kb on + strand, within yecN at 134.933 kb on - strand, within yecN at 135.005 kb on + strand at 135.005 kb on + strand at 135.079 kb on + strand at 135.079 kb on + strand at 135.080 kb on - strand at 135.085 kb on - strand at 135.159 kb on + strand at 135.176 kb on + strand at 135.176 kb on + strand at 135.176 kb on + strand at 135.176 kb on + strand at 135.177 kb on - strand at 135.177 kb on - strand at 135.204 kb on - strand, within yecE at 135.212 kb on + strand, within yecE at 135.213 kb on - strand, within yecE at 135.217 kb on - strand, within yecE at 135.233 kb on + strand, within yecE at 135.234 kb on - strand, within yecE at 135.264 kb on + strand, within yecE at 135.299 kb on + strand, within yecE at 135.299 kb on + strand, within yecE at 135.346 kb on - strand, within yecE at 135.355 kb on - strand, within yecE at 135.355 kb on - strand, within yecE at 135.539 kb on + strand, within yecE at 135.540 kb on - strand, within yecE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 132,886 + -1.3 133,126 + cmoB JDDGAC_00795 0.24 +0.8 133,126 + cmoB JDDGAC_00795 0.24 -0.5 133,332 - cmoB JDDGAC_00795 0.45 +2.0 133,505 + cmoB JDDGAC_00795 0.63 +1.9 133,579 - cmoB JDDGAC_00795 0.70 -1.0 133,685 - cmoB JDDGAC_00795 0.81 +0.9 133,886 - -1.3 133,965 + cmoA JDDGAC_00800 0.14 +0.1 134,055 + cmoA JDDGAC_00800 0.26 -2.0 134,276 - cmoA JDDGAC_00800 0.55 +0.5 134,305 - cmoA JDDGAC_00800 0.59 -1.0 134,305 - cmoA JDDGAC_00800 0.59 -2.1 134,462 - cmoA JDDGAC_00800 0.80 -3.0 134,481 + cmoA JDDGAC_00800 0.83 +0.1 134,640 - +0.2 134,680 + -0.6 134,682 + +0.3 134,682 + +2.0 134,682 + -1.3 134,683 - +0.8 134,683 - +0.0 134,778 + yecN JDDGAC_00805 0.33 -0.3 134,818 + yecN JDDGAC_00805 0.43 -0.5 134,819 - yecN JDDGAC_00805 0.43 +0.2 134,819 - yecN JDDGAC_00805 0.43 -0.3 134,884 + yecN JDDGAC_00805 0.60 +0.4 134,884 + yecN JDDGAC_00805 0.60 +0.5 134,885 - yecN JDDGAC_00805 0.60 -0.5 134,886 + yecN JDDGAC_00805 0.60 -0.8 134,886 + yecN JDDGAC_00805 0.60 -1.1 134,933 - yecN JDDGAC_00805 0.72 +0.3 135,005 + -1.2 135,005 + +0.1 135,079 + +0.3 135,079 + +0.4 135,080 - +0.2 135,085 - -1.5 135,159 + +0.7 135,176 + +1.5 135,176 + -0.5 135,176 + +0.1 135,176 + +1.9 135,177 - -0.4 135,177 - +0.4 135,204 - yecE JDDGAC_00810 0.13 -0.5 135,212 + yecE JDDGAC_00810 0.14 -0.1 135,213 - yecE JDDGAC_00810 0.14 +0.9 135,217 - yecE JDDGAC_00810 0.15 -0.7 135,233 + yecE JDDGAC_00810 0.17 +2.0 135,234 - yecE JDDGAC_00810 0.17 -1.1 135,264 + yecE JDDGAC_00810 0.21 -0.5 135,299 + yecE JDDGAC_00810 0.25 +1.0 135,299 + yecE JDDGAC_00810 0.25 -0.4 135,346 - yecE JDDGAC_00810 0.31 +1.1 135,355 - yecE JDDGAC_00810 0.32 -0.8 135,355 - yecE JDDGAC_00810 0.32 -1.5 135,539 + yecE JDDGAC_00810 0.54 -1.3 135,540 - yecE JDDGAC_00810 0.54 +0.8
Or see this region's nucleotide sequence