Experiment: WM_TP11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedP and yodD are separated by 297 nucleotides yodD and dsrB are separated by 162 nucleotides dsrB and rcsA are separated by 43 nucleotides rcsA and fliR are separated by 289 nucleotides
JDDGAC_00215: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 38,363 to 39,178
yedP
JDDGAC_00225: yodD - YodD family peroxide/acid resistance protein, at 39,476 to 39,703
yodD
JDDGAC_00230: dsrB - protein DsrB, at 39,866 to 40,054
dsrB
JDDGAC_00235: rcsA - transcriptional regulator RcsA, at 40,098 to 40,721
rcsA
JDDGAC_00240: fliR - flagellar type III secretion system protein FliR, at 41,011 to 41,796
fliR
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.013 kb on - strand, within yedP at 39.034 kb on + strand, within yedP at 39.109 kb on - strand at 39.112 kb on + strand at 39.112 kb on + strand at 39.112 kb on + strand at 39.113 kb on - strand at 39.113 kb on - strand at 39.113 kb on - strand at 39.146 kb on - strand at 39.178 kb on + strand at 39.312 kb on - strand at 39.337 kb on - strand at 39.424 kb on + strand at 39.424 kb on + strand at 39.547 kb on + strand, within yodD at 39.547 kb on + strand, within yodD at 39.548 kb on - strand, within yodD at 39.548 kb on - strand, within yodD at 39.747 kb on + strand at 39.747 kb on + strand at 39.767 kb on + strand at 39.768 kb on - strand at 39.768 kb on - strand at 39.768 kb on - strand at 39.771 kb on + strand at 39.772 kb on - strand at 39.773 kb on + strand at 39.836 kb on - strand at 39.836 kb on - strand at 40.007 kb on - strand, within dsrB at 40.052 kb on + strand at 40.053 kb on - strand at 40.057 kb on + strand at 40.196 kb on + strand, within rcsA at 40.532 kb on + strand, within rcsA at 40.600 kb on - strand, within rcsA at 40.839 kb on - strand at 41.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP11 remove 39,013 - yedP JDDGAC_00215 0.80 -0.7 39,034 + yedP JDDGAC_00215 0.82 +2.3 39,109 - -0.2 39,112 + +0.5 39,112 + +0.3 39,112 + -0.3 39,113 - -0.4 39,113 - -0.7 39,113 - -0.3 39,146 - -1.1 39,178 + +1.4 39,312 - -0.4 39,337 - -0.1 39,424 + -0.3 39,424 + -0.9 39,547 + yodD JDDGAC_00225 0.31 -0.1 39,547 + yodD JDDGAC_00225 0.31 -1.4 39,548 - yodD JDDGAC_00225 0.32 -0.5 39,548 - yodD JDDGAC_00225 0.32 -0.7 39,747 + +0.3 39,747 + +0.6 39,767 + -1.1 39,768 - -1.6 39,768 - +0.4 39,768 - -1.4 39,771 + +0.2 39,772 - -0.5 39,773 + -1.7 39,836 - -0.1 39,836 - -1.2 40,007 - dsrB JDDGAC_00230 0.75 -2.2 40,052 + -1.2 40,053 - +0.2 40,057 + +0.6 40,196 + rcsA JDDGAC_00235 0.16 -1.3 40,532 + rcsA JDDGAC_00235 0.70 -0.5 40,600 - rcsA JDDGAC_00235 0.80 -3.2 40,839 - -0.2 41,014 + +1.9
Or see this region's nucleotide sequence