Strain Fitness in Pseudomonas sp. RS175 around PFR28_00241

Experiment: L-Proline (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00240 and PFR28_00241 are separated by 344 nucleotidesPFR28_00241 and PFR28_00242 are separated by 795 nucleotides PFR28_00240: PFR28_00240 - Flavohemoprotein, at 266,837 to 268,018 _00240 PFR28_00241: PFR28_00241 - Disulfide bond formation protein B, at 268,363 to 268,857 _00241 PFR28_00242: PFR28_00242 - Cytochrome bo(3) ubiquinol oxidase subunit 2, at 269,653 to 270,600 _00242 Position (kb) 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.533 kb on + strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.596 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.794 kb on + strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.795 kb on - strand, within PFR28_00240at 267.800 kb on + strand, within PFR28_00240at 267.800 kb on + strand, within PFR28_00240at 267.801 kb on - strand, within PFR28_00240at 267.902 kb on + strandat 267.902 kb on + strandat 267.903 kb on - strandat 267.903 kb on - strandat 268.016 kb on + strandat 268.016 kb on + strandat 268.016 kb on + strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.017 kb on - strandat 268.194 kb on + strandat 268.194 kb on + strandat 268.195 kb on - strandat 268.195 kb on - strandat 268.206 kb on - strandat 268.206 kb on - strandat 268.221 kb on + strandat 268.221 kb on + strandat 268.221 kb on + strandat 268.273 kb on + strandat 268.273 kb on + strandat 268.274 kb on - strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.329 kb on + strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.330 kb on - strandat 268.388 kb on - strandat 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.438 kb on + strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.439 kb on - strand, within PFR28_00241at 268.479 kb on + strand, within PFR28_00241at 268.624 kb on + strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241at 268.625 kb on - strand, within PFR28_00241at 269.105 kb on - strandat 269.197 kb on + strandat 269.198 kb on - strandat 269.270 kb on + strandat 269.271 kb on - strandat 269.271 kb on - strandat 269.271 kb on - strandat 269.320 kb on - strandat 269.337 kb on + strandat 269.337 kb on + strandat 269.337 kb on + strandat 269.338 kb on - strandat 269.443 kb on + strandat 269.469 kb on + strandat 269.469 kb on + strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.470 kb on - strandat 269.482 kb on + strandat 269.658 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.854 kb on + strand, within PFR28_00242at 269.854 kb on + strand, within PFR28_00242at 269.855 kb on - strand, within PFR28_00242

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C) 10 mM
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267,407 + PFR28_00240 0.48 +0.8
267,407 + PFR28_00240 0.48 -1.1
267,407 + PFR28_00240 0.48 +0.1
267,408 - PFR28_00240 0.48 +0.5
267,408 - PFR28_00240 0.48 -0.4
267,408 - PFR28_00240 0.48 +0.4
267,445 - PFR28_00240 0.51 -0.4
267,445 - PFR28_00240 0.51 +0.1
267,455 + PFR28_00240 0.52 +0.3
267,455 + PFR28_00240 0.52 +0.7
267,455 + PFR28_00240 0.52 -1.4
267,456 - PFR28_00240 0.52 -0.1
267,456 - PFR28_00240 0.52 +0.1
267,533 + PFR28_00240 0.59 -0.1
267,534 - PFR28_00240 0.59 -0.4
267,534 - PFR28_00240 0.59 -0.8
267,596 + PFR28_00240 0.64 -1.6
267,794 + PFR28_00240 0.81 +0.9
267,794 + PFR28_00240 0.81 +0.6
267,794 + PFR28_00240 0.81 -0.1
267,794 + PFR28_00240 0.81 +0.4
267,794 + PFR28_00240 0.81 -0.5
267,794 + PFR28_00240 0.81 -0.5
267,794 + PFR28_00240 0.81 +0.4
267,794 + PFR28_00240 0.81 -0.4
267,794 + PFR28_00240 0.81 +0.1
267,794 + PFR28_00240 0.81 -1.6
267,794 + PFR28_00240 0.81 +0.1
267,794 + PFR28_00240 0.81 -0.6
267,794 + PFR28_00240 0.81 +0.1
267,794 + PFR28_00240 0.81 +0.2
267,794 + PFR28_00240 0.81 -0.2
267,795 - PFR28_00240 0.81 -1.1
267,795 - PFR28_00240 0.81 +0.2
267,795 - PFR28_00240 0.81 -0.3
267,795 - PFR28_00240 0.81 -0.0
267,795 - PFR28_00240 0.81 +0.7
267,795 - PFR28_00240 0.81 +1.2
267,795 - PFR28_00240 0.81 +0.9
267,795 - PFR28_00240 0.81 +0.2
267,795 - PFR28_00240 0.81 -0.7
267,795 - PFR28_00240 0.81 +0.5
267,795 - PFR28_00240 0.81 +0.3
267,795 - PFR28_00240 0.81 +0.1
267,795 - PFR28_00240 0.81 -2.6
267,800 + PFR28_00240 0.81 -0.6
267,800 + PFR28_00240 0.81 -2.7
267,801 - PFR28_00240 0.82 +0.6
267,902 + +0.6
267,902 + +0.9
267,903 - -0.4
267,903 - +0.3
268,016 + -0.1
268,016 + +0.3
268,016 + -0.0
268,017 - -0.8
268,017 - -0.9
268,017 - +0.6
268,017 - +0.4
268,017 - +0.1
268,017 - +0.3
268,017 - +0.3
268,017 - -0.8
268,194 + -2.2
268,194 + -0.6
268,195 - -0.7
268,195 - +0.1
268,206 - +0.1
268,206 - +1.3
268,221 + +0.3
268,221 + +0.4
268,221 + -0.8
268,273 + +0.2
268,273 + -0.2
268,274 - +0.5
268,329 + +0.2
268,329 + -0.1
268,329 + -1.0
268,329 + +0.2
268,329 + +0.4
268,329 + +0.5
268,329 + -2.3
268,330 - +0.3
268,330 - -0.4
268,330 - +2.8
268,330 - -0.5
268,388 - -0.8
268,438 + PFR28_00241 0.15 -1.6
268,438 + PFR28_00241 0.15 +1.2
268,438 + PFR28_00241 0.15 -1.1
268,438 + PFR28_00241 0.15 -2.1
268,439 - PFR28_00241 0.15 +1.2
268,439 - PFR28_00241 0.15 -1.4
268,439 - PFR28_00241 0.15 -0.5
268,439 - PFR28_00241 0.15 -0.4
268,479 + PFR28_00241 0.23 -0.6
268,624 + PFR28_00241 0.53 -0.2
268,625 - PFR28_00241 0.53 -2.5
268,625 - PFR28_00241 0.53 +0.2
268,625 - PFR28_00241 0.53 -3.6
269,105 - -0.2
269,197 + +0.6
269,198 - -0.9
269,270 + +0.4
269,271 - +0.2
269,271 - +0.2
269,271 - -0.0
269,320 - -0.3
269,337 + -1.7
269,337 + +0.0
269,337 + -0.6
269,338 - -0.4
269,443 + -0.1
269,469 + +1.2
269,469 + +1.2
269,470 - +0.5
269,470 - -0.6
269,470 - -0.2
269,470 - -0.4
269,482 + +1.8
269,658 + -0.2
269,681 + -1.4
269,681 + -0.4
269,681 + -0.6
269,681 + -1.7
269,681 + +0.1
269,682 - -0.9
269,682 - +0.5
269,682 - -1.9
269,682 - -0.4
269,682 - +0.2
269,854 + PFR28_00242 0.21 -1.2
269,854 + PFR28_00242 0.21 -0.4
269,855 - PFR28_00242 0.21 -0.5

Or see this region's nucleotide sequence