Strain Fitness in Escherichia coli ECRC101 around MCAODC_19865

Experiment: GB_Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyodB and MCAODC_19860 are separated by 570 nucleotidesMCAODC_19860 and MCAODC_19865 are separated by 50 nucleotides MCAODC_19855: yodB - Cytochrome b561-like protein, at 796,115 to 796,645 yodB MCAODC_19860: MCAODC_19860 - tRNA-Xxx, at 797,216 to 797,305 _19860 MCAODC_19865: MCAODC_19865 - hypothetical protein, at 797,356 to 797,574 _19865 Position (kb) 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 796.390 kb on + strand, within yodBat 796.543 kb on + strand, within yodBat 796.550 kb on + strand, within yodBat 796.563 kb on + strand, within yodBat 796.613 kb on - strandat 796.613 kb on - strandat 796.695 kb on - strandat 796.703 kb on - strandat 796.731 kb on + strandat 796.765 kb on + strandat 797.304 kb on - strandat 797.494 kb on - strand, within MCAODC_19865at 797.506 kb on - strand, within MCAODC_19865at 797.718 kb on - strandat 797.721 kb on + strandat 797.721 kb on + strandat 797.759 kb on + strandat 798.015 kb on + strandat 798.315 kb on + strandat 798.333 kb on + strandat 798.333 kb on + strandat 798.420 kb on - strandat 798.454 kb on + strandat 798.536 kb on + strandat 798.537 kb on - strandat 798.545 kb on + strandat 798.546 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_Bas14
remove
796,390 + yodB MCAODC_19855 0.52 -0.9
796,543 + yodB MCAODC_19855 0.81 +0.7
796,550 + yodB MCAODC_19855 0.82 -0.2
796,563 + yodB MCAODC_19855 0.84 -0.2
796,613 - -0.8
796,613 - +2.2
796,695 - -0.6
796,703 - +0.2
796,731 + -0.9
796,765 + -1.8
797,304 - -0.5
797,494 - MCAODC_19865 0.63 -0.5
797,506 - MCAODC_19865 0.68 -1.6
797,718 - +1.1
797,721 + +0.5
797,721 + +1.0
797,759 + +0.3
798,015 + +0.6
798,315 + +0.2
798,333 + +0.0
798,333 + +1.6
798,420 - +0.5
798,454 + -1.8
798,536 + -0.3
798,537 - +0.6
798,545 + +1.3
798,546 - +0.8

Or see this region's nucleotide sequence