Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hexR and pyk are separated by 127 nucleotides pyk and lpxM are separated by 130 nucleotides
MCAODC_19080: hexR - DNA-binding transcriptional regulator HexR, at 667,750 to 668,619
hexR
MCAODC_19085: pyk - pyruvate kinase, at 668,747 to 670,189
pyk
MCAODC_19090: lpxM - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 670,320 to 671,291
lpxM
Position (kb) 668
669
670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 667.987 kb on + strand, within hexR at 667.988 kb on - strand, within hexR at 668.042 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.235 kb on + strand, within hexR at 668.235 kb on + strand, within hexR at 668.358 kb on + strand, within hexR at 668.359 kb on - strand, within hexR at 668.439 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.450 kb on - strand, within hexR at 668.451 kb on + strand, within hexR at 668.451 kb on + strand, within hexR at 668.451 kb on + strand, within hexR at 668.452 kb on - strand, within hexR at 668.489 kb on + strand, within hexR at 668.489 kb on + strand, within hexR at 668.489 kb on + strand, within hexR at 668.490 kb on - strand, within hexR at 668.541 kb on + strand at 668.541 kb on + strand at 668.541 kb on + strand at 668.598 kb on + strand at 668.638 kb on + strand at 668.644 kb on + strand at 668.646 kb on + strand at 668.665 kb on + strand at 668.742 kb on - strand at 668.744 kb on + strand at 668.744 kb on + strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.813 kb on - strand at 668.850 kb on + strand at 668.850 kb on + strand at 668.855 kb on - strand at 668.980 kb on - strand, within pyk at 669.013 kb on + strand, within pyk at 669.013 kb on + strand, within pyk at 669.160 kb on - strand, within pyk at 669.229 kb on + strand, within pyk at 669.230 kb on - strand, within pyk at 669.292 kb on + strand, within pyk at 669.293 kb on - strand, within pyk at 669.315 kb on + strand, within pyk at 669.315 kb on + strand, within pyk at 669.320 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.857 kb on + strand, within pyk at 669.858 kb on - strand, within pyk at 669.865 kb on + strand, within pyk at 669.865 kb on + strand, within pyk at 669.982 kb on + strand, within pyk at 670.004 kb on + strand, within pyk at 670.094 kb on + strand at 670.156 kb on + strand at 670.187 kb on + strand at 670.187 kb on + strand at 670.187 kb on + strand at 670.187 kb on + strand at 670.191 kb on + strand at 670.229 kb on - strand at 670.241 kb on + strand at 670.241 kb on + strand at 670.242 kb on - strand at 670.396 kb on - strand at 670.396 kb on - strand at 670.406 kb on - strand at 670.467 kb on - strand, within lpxM at 670.483 kb on - strand, within lpxM at 670.483 kb on - strand, within lpxM at 670.541 kb on - strand, within lpxM at 670.616 kb on - strand, within lpxM at 670.675 kb on + strand, within lpxM at 670.676 kb on - strand, within lpxM at 670.698 kb on + strand, within lpxM at 670.780 kb on + strand, within lpxM at 670.884 kb on + strand, within lpxM at 670.885 kb on - strand, within lpxM at 670.893 kb on - strand, within lpxM at 670.908 kb on - strand, within lpxM
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 667,987 + hexR MCAODC_19080 0.27 +0.3 667,988 - hexR MCAODC_19080 0.27 -3.4 668,042 + hexR MCAODC_19080 0.34 -0.7 668,193 + hexR MCAODC_19080 0.51 +0.3 668,193 + hexR MCAODC_19080 0.51 +1.1 668,193 + hexR MCAODC_19080 0.51 +0.2 668,235 + hexR MCAODC_19080 0.56 +0.0 668,235 + hexR MCAODC_19080 0.56 +0.4 668,358 + hexR MCAODC_19080 0.70 -1.5 668,359 - hexR MCAODC_19080 0.70 -0.8 668,439 + hexR MCAODC_19080 0.79 -0.4 668,449 + hexR MCAODC_19080 0.80 +0.6 668,449 + hexR MCAODC_19080 0.80 -2.1 668,449 + hexR MCAODC_19080 0.80 +0.6 668,449 + hexR MCAODC_19080 0.80 -0.2 668,449 + hexR MCAODC_19080 0.80 +0.1 668,450 - hexR MCAODC_19080 0.80 +0.6 668,451 + hexR MCAODC_19080 0.81 +1.6 668,451 + hexR MCAODC_19080 0.81 +2.0 668,451 + hexR MCAODC_19080 0.81 +2.4 668,452 - hexR MCAODC_19080 0.81 +3.2 668,489 + hexR MCAODC_19080 0.85 -0.6 668,489 + hexR MCAODC_19080 0.85 +0.8 668,489 + hexR MCAODC_19080 0.85 -1.9 668,490 - hexR MCAODC_19080 0.85 +2.4 668,541 + +0.0 668,541 + -0.1 668,541 + +1.1 668,598 + -1.5 668,638 + -1.2 668,644 + -0.6 668,646 + +0.3 668,665 + +0.6 668,742 - +1.6 668,744 + -0.2 668,744 + -1.2 668,745 - +1.0 668,745 - +0.1 668,745 - +2.0 668,745 - +1.1 668,813 - +0.6 668,850 + -1.3 668,850 + -0.8 668,855 - -0.7 668,980 - pyk MCAODC_19085 0.16 +1.2 669,013 + pyk MCAODC_19085 0.18 -1.7 669,013 + pyk MCAODC_19085 0.18 -0.1 669,160 - pyk MCAODC_19085 0.29 +0.1 669,229 + pyk MCAODC_19085 0.33 -1.5 669,230 - pyk MCAODC_19085 0.33 -0.7 669,292 + pyk MCAODC_19085 0.38 -0.3 669,293 - pyk MCAODC_19085 0.38 +1.6 669,315 + pyk MCAODC_19085 0.39 -0.7 669,315 + pyk MCAODC_19085 0.39 -1.0 669,320 + pyk MCAODC_19085 0.40 -0.8 669,362 + pyk MCAODC_19085 0.43 -0.9 669,362 + pyk MCAODC_19085 0.43 +1.4 669,362 + pyk MCAODC_19085 0.43 -0.5 669,362 + pyk MCAODC_19085 0.43 -0.9 669,857 + pyk MCAODC_19085 0.77 -1.0 669,858 - pyk MCAODC_19085 0.77 +1.1 669,865 + pyk MCAODC_19085 0.77 -0.1 669,865 + pyk MCAODC_19085 0.77 -0.8 669,982 + pyk MCAODC_19085 0.86 +0.4 670,004 + pyk MCAODC_19085 0.87 +0.5 670,094 + +0.4 670,156 + +1.1 670,187 + +0.7 670,187 + +0.2 670,187 + +0.1 670,187 + -0.4 670,191 + -1.0 670,229 - -0.3 670,241 + +0.8 670,241 + +0.2 670,242 - -1.2 670,396 - +1.1 670,396 - -0.1 670,406 - +1.8 670,467 - lpxM MCAODC_19090 0.15 -1.0 670,483 - lpxM MCAODC_19090 0.17 -0.1 670,483 - lpxM MCAODC_19090 0.17 +1.2 670,541 - lpxM MCAODC_19090 0.23 -1.6 670,616 - lpxM MCAODC_19090 0.30 +2.2 670,675 + lpxM MCAODC_19090 0.37 -1.1 670,676 - lpxM MCAODC_19090 0.37 +0.3 670,698 + lpxM MCAODC_19090 0.39 -0.2 670,780 + lpxM MCAODC_19090 0.47 +0.5 670,884 + lpxM MCAODC_19090 0.58 +2.2 670,885 - lpxM MCAODC_19090 0.58 -2.1 670,893 - lpxM MCAODC_19090 0.59 +0.7 670,908 - lpxM MCAODC_19090 0.60 -1.6
Or see this region's nucleotide sequence