Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt punC and cfa are separated by 290 nucleotides cfa and ribE are separated by 39 nucleotides ribE and mdtK are separated by 214 nucleotides
MCAODC_18035: punC - purine nucleoside transporter PunC, at 468,891 to 470,102
punC
MCAODC_18040: cfa - cyclopropane fatty acyl phospholipid synthase, at 470,393 to 471,541
cfa
MCAODC_18045: ribE - riboflavin synthase, at 471,581 to 472,222
ribE
MCAODC_18050: mdtK - multidrug efflux MATE transporter MdtK, at 472,437 to 473,810
mdtK
Position (kb) 470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 469.397 kb on + strand, within punC at 469.489 kb on + strand, within punC at 469.489 kb on + strand, within punC at 469.490 kb on - strand, within punC at 469.522 kb on + strand, within punC at 469.524 kb on + strand, within punC at 469.524 kb on + strand, within punC at 469.524 kb on + strand, within punC at 469.593 kb on + strand, within punC at 469.620 kb on + strand, within punC at 469.620 kb on + strand, within punC at 469.620 kb on + strand, within punC at 469.634 kb on + strand, within punC at 469.699 kb on + strand, within punC at 469.830 kb on + strand, within punC at 469.835 kb on + strand, within punC at 470.006 kb on - strand at 470.025 kb on + strand at 470.105 kb on + strand at 470.116 kb on - strand at 470.149 kb on + strand at 470.169 kb on + strand at 470.203 kb on + strand at 470.242 kb on + strand at 470.298 kb on + strand at 470.359 kb on - strand at 470.359 kb on - strand at 470.461 kb on - strand at 470.465 kb on - strand at 470.476 kb on + strand at 470.577 kb on - strand, within cfa at 470.577 kb on - strand, within cfa at 470.578 kb on + strand, within cfa at 470.579 kb on - strand, within cfa at 470.942 kb on + strand, within cfa at 470.943 kb on - strand, within cfa at 470.953 kb on + strand, within cfa at 470.953 kb on + strand, within cfa at 470.953 kb on + strand, within cfa at 470.953 kb on + strand, within cfa at 470.954 kb on - strand, within cfa at 470.954 kb on - strand, within cfa at 470.965 kb on - strand, within cfa at 471.085 kb on + strand, within cfa at 471.133 kb on + strand, within cfa at 471.193 kb on + strand, within cfa at 471.238 kb on + strand, within cfa at 471.238 kb on + strand, within cfa at 471.239 kb on - strand, within cfa at 471.325 kb on + strand, within cfa at 471.341 kb on + strand, within cfa at 471.342 kb on - strand, within cfa at 471.346 kb on + strand, within cfa at 471.407 kb on + strand, within cfa at 471.433 kb on + strand at 471.433 kb on + strand at 471.433 kb on + strand at 471.437 kb on + strand at 471.438 kb on - strand at 471.552 kb on - strand at 471.639 kb on - strand at 472.246 kb on - strand at 472.246 kb on - strand at 472.287 kb on + strand at 472.345 kb on - strand at 472.349 kb on + strand at 472.349 kb on + strand at 472.411 kb on + strand at 472.414 kb on - strand at 472.414 kb on - strand at 472.417 kb on + strand at 472.424 kb on - strand at 472.447 kb on - strand at 472.448 kb on + strand at 472.471 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 469,397 + punC MCAODC_18035 0.42 +1.4 469,489 + punC MCAODC_18035 0.49 -1.9 469,489 + punC MCAODC_18035 0.49 +0.0 469,490 - punC MCAODC_18035 0.49 -0.6 469,522 + punC MCAODC_18035 0.52 +0.5 469,524 + punC MCAODC_18035 0.52 -0.5 469,524 + punC MCAODC_18035 0.52 -0.8 469,524 + punC MCAODC_18035 0.52 -0.1 469,593 + punC MCAODC_18035 0.58 +0.3 469,620 + punC MCAODC_18035 0.60 +0.8 469,620 + punC MCAODC_18035 0.60 -1.4 469,620 + punC MCAODC_18035 0.60 +0.8 469,634 + punC MCAODC_18035 0.61 +0.5 469,699 + punC MCAODC_18035 0.67 -0.1 469,830 + punC MCAODC_18035 0.77 -0.2 469,835 + punC MCAODC_18035 0.78 +0.4 470,006 - -1.5 470,025 + -2.3 470,105 + -0.7 470,116 - +0.3 470,149 + -1.1 470,169 + +0.3 470,203 + -2.2 470,242 + -0.4 470,298 + -0.7 470,359 - +0.3 470,359 - +0.7 470,461 - -0.7 470,465 - -1.1 470,476 + +0.8 470,577 - cfa MCAODC_18040 0.16 +1.3 470,577 - cfa MCAODC_18040 0.16 +0.4 470,578 + cfa MCAODC_18040 0.16 +0.5 470,579 - cfa MCAODC_18040 0.16 -0.7 470,942 + cfa MCAODC_18040 0.48 -0.2 470,943 - cfa MCAODC_18040 0.48 -1.8 470,953 + cfa MCAODC_18040 0.49 -0.2 470,953 + cfa MCAODC_18040 0.49 -1.5 470,953 + cfa MCAODC_18040 0.49 -0.5 470,953 + cfa MCAODC_18040 0.49 -1.4 470,954 - cfa MCAODC_18040 0.49 -3.0 470,954 - cfa MCAODC_18040 0.49 -0.7 470,965 - cfa MCAODC_18040 0.50 +0.8 471,085 + cfa MCAODC_18040 0.60 -0.6 471,133 + cfa MCAODC_18040 0.64 -1.0 471,193 + cfa MCAODC_18040 0.70 -0.4 471,238 + cfa MCAODC_18040 0.74 -1.6 471,238 + cfa MCAODC_18040 0.74 -0.0 471,239 - cfa MCAODC_18040 0.74 +1.1 471,325 + cfa MCAODC_18040 0.81 -0.8 471,341 + cfa MCAODC_18040 0.83 -0.6 471,342 - cfa MCAODC_18040 0.83 +0.5 471,346 + cfa MCAODC_18040 0.83 -1.4 471,407 + cfa MCAODC_18040 0.88 -0.1 471,433 + -0.8 471,433 + -1.0 471,433 + +0.9 471,437 + -0.0 471,438 - +0.1 471,552 - +0.6 471,639 - +0.7 472,246 - -1.5 472,246 - -0.8 472,287 + +4.3 472,345 - -0.5 472,349 + +0.7 472,349 + -0.9 472,411 + +1.8 472,414 - -0.6 472,414 - -0.5 472,417 + -0.2 472,424 - -1.6 472,447 - +1.4 472,448 + -1.0 472,471 + -0.4
Or see this region's nucleotide sequence