Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgI and folM are separated by 36 nucleotides folM and ydgC overlap by 4 nucleotides ydgC and rstA are separated by 128 nucleotides rstA and rstB are separated by 3 nucleotides
MCAODC_17730: ydgI - Putative arginine/ornithine antiporter, at 408,627 to 410,009
ydgI
MCAODC_17735: folM - dihydromonapterin reductase, at 410,046 to 410,768
folM
MCAODC_17740: ydgC - Inner membrane protein YdgC, at 410,765 to 411,100
ydgC
MCAODC_17745: rstA - two-component system response regulator RstA, at 411,229 to 411,948
rstA
MCAODC_17750: rstB - two-component system sensor histidine kinase RstB, at 411,952 to 413,253
rstB
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 409.819 kb on + strand, within ydgI at 409.819 kb on + strand, within ydgI at 409.830 kb on + strand, within ydgI at 409.899 kb on + strand at 409.916 kb on + strand at 409.916 kb on + strand at 409.916 kb on + strand at 409.925 kb on + strand at 409.925 kb on + strand at 409.930 kb on + strand at 409.969 kb on + strand at 410.074 kb on + strand at 410.166 kb on + strand, within folM at 410.375 kb on + strand, within folM at 410.414 kb on - strand, within folM at 410.464 kb on - strand, within folM at 410.492 kb on + strand, within folM at 410.500 kb on - strand, within folM at 410.528 kb on + strand, within folM at 410.579 kb on + strand, within folM at 410.701 kb on - strand at 410.705 kb on - strand at 410.705 kb on - strand at 410.708 kb on + strand at 410.787 kb on - strand at 410.788 kb on + strand at 410.914 kb on + strand, within ydgC at 410.968 kb on + strand, within ydgC at 410.969 kb on - strand, within ydgC at 410.969 kb on - strand, within ydgC at 410.971 kb on - strand, within ydgC at 411.022 kb on - strand, within ydgC at 411.181 kb on - strand at 411.212 kb on + strand at 411.237 kb on + strand at 411.243 kb on - strand at 411.243 kb on - strand at 411.287 kb on - strand at 411.305 kb on + strand, within rstA at 411.305 kb on + strand, within rstA at 411.305 kb on + strand, within rstA at 411.305 kb on + strand, within rstA at 411.306 kb on - strand, within rstA at 411.306 kb on - strand, within rstA at 411.393 kb on - strand, within rstA at 411.480 kb on + strand, within rstA at 411.563 kb on + strand, within rstA at 411.746 kb on + strand, within rstA at 411.746 kb on + strand, within rstA at 411.747 kb on - strand, within rstA at 412.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 409,819 + ydgI MCAODC_17730 0.86 -0.2 409,819 + ydgI MCAODC_17730 0.86 +0.8 409,830 + ydgI MCAODC_17730 0.87 +0.6 409,899 + -0.1 409,916 + -0.3 409,916 + -1.1 409,916 + -2.0 409,925 + +0.4 409,925 + -2.1 409,930 + -1.5 409,969 + +0.5 410,074 + -0.2 410,166 + folM MCAODC_17735 0.17 -1.6 410,375 + folM MCAODC_17735 0.46 -0.3 410,414 - folM MCAODC_17735 0.51 +0.0 410,464 - folM MCAODC_17735 0.58 -0.8 410,492 + folM MCAODC_17735 0.62 -0.6 410,500 - folM MCAODC_17735 0.63 +1.7 410,528 + folM MCAODC_17735 0.67 -0.7 410,579 + folM MCAODC_17735 0.74 +0.9 410,701 - +0.4 410,705 - +1.3 410,705 - +1.7 410,708 + +2.3 410,787 - -0.7 410,788 + -1.8 410,914 + ydgC MCAODC_17740 0.44 -1.9 410,968 + ydgC MCAODC_17740 0.60 -1.5 410,969 - ydgC MCAODC_17740 0.61 -0.0 410,969 - ydgC MCAODC_17740 0.61 -1.5 410,971 - ydgC MCAODC_17740 0.61 -0.7 411,022 - ydgC MCAODC_17740 0.76 -1.2 411,181 - +0.7 411,212 + +0.7 411,237 + -0.8 411,243 - -0.7 411,243 - -1.3 411,287 - +0.5 411,305 + rstA MCAODC_17745 0.11 -1.4 411,305 + rstA MCAODC_17745 0.11 -1.1 411,305 + rstA MCAODC_17745 0.11 -0.9 411,305 + rstA MCAODC_17745 0.11 -0.0 411,306 - rstA MCAODC_17745 0.11 +0.4 411,306 - rstA MCAODC_17745 0.11 -1.4 411,393 - rstA MCAODC_17745 0.23 +3.0 411,480 + rstA MCAODC_17745 0.35 +0.4 411,563 + rstA MCAODC_17745 0.46 -0.1 411,746 + rstA MCAODC_17745 0.72 +0.9 411,746 + rstA MCAODC_17745 0.72 -0.8 411,747 - rstA MCAODC_17745 0.72 +0.1 412,030 + -0.0
Or see this region's nucleotide sequence