Strain Fitness in Escherichia coli ECRC101 around MCAODC_14625

Experiment: GB_Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_Bas14
2,880,146	-	cdd	MCAODC_14620	0.17	-0.3
2,880,151	+	cdd	MCAODC_14620	0.17	+0.3
2,880,152	-	cdd	MCAODC_14620	0.17	-0.1
2,880,152	-	cdd	MCAODC_14620	0.17	+0.8
2,880,203	+	cdd	MCAODC_14620	0.23	-1.1
2,880,204	-	cdd	MCAODC_14620	0.23	+1.6
2,880,204	-	cdd	MCAODC_14620	0.23	-1.2
2,880,232	-	cdd	MCAODC_14620	0.26	+0.7
2,880,261	+	cdd	MCAODC_14620	0.30	-0.4
2,880,261	+	cdd	MCAODC_14620	0.30	-1.1
2,880,367	-	cdd	MCAODC_14620	0.42	+2.7
2,880,404	+	cdd	MCAODC_14620	0.46	-0.4
2,880,445	-	cdd	MCAODC_14620	0.51	-1.1
2,880,507	-	cdd	MCAODC_14620	0.58	+1.4
2,880,507	-	cdd	MCAODC_14620	0.58	-0.5
2,880,507	-	cdd	MCAODC_14620	0.58	-0.6
2,880,669	+	cdd	MCAODC_14620	0.76	+0.1
2,880,670	-	cdd	MCAODC_14620	0.76	-0.9
2,880,670	-	cdd	MCAODC_14620	0.76	-0.6
2,880,715	+	cdd	MCAODC_14620	0.81	-1.1
2,880,800	+				+0.9
2,880,801	-				+0.8
2,880,801	-				+1.0
2,880,895	+				+0.1
2,880,895	+				+1.1
2,880,903	+				-1.2
2,880,938	+				-0.3
2,880,938	+				-0.6
2,880,939	-				+0.5
2,880,939	-				+0.9
2,880,939	-				-0.3
2,880,940	+				-1.6
2,880,941	-				-0.4
2,880,941	-				-0.0
2,880,941	-				-0.5
2,880,941	-				-0.3
2,880,941	-				+0.6
2,880,941	-				-0.4
2,880,960	-				+2.4
2,880,964	-				+0.1
2,880,981	+				-0.4
2,881,021	+				-1.7
2,881,065	+				-1.5
2,881,069	+				-1.7
2,881,079	-				-1.9
2,881,098	+	yohK	MCAODC_14625	0.12	-1.3
2,881,098	+	yohK	MCAODC_14625	0.12	-0.3
2,881,191	+	yohK	MCAODC_14625	0.26	-1.8
2,881,197	+	yohK	MCAODC_14625	0.27	-4.0
2,881,218	+	yohK	MCAODC_14625	0.30	-2.7
2,881,290	+	yohK	MCAODC_14625	0.40	-2.9
2,881,290	+	yohK	MCAODC_14625	0.40	-1.8
2,881,465	+	yohK	MCAODC_14625	0.65	-4.0
2,881,475	+	yohK	MCAODC_14625	0.67	-1.0
2,881,475	+	yohK	MCAODC_14625	0.67	+1.5
2,881,476	-	yohK	MCAODC_14625	0.67	+0.2
2,881,476	-	yohK	MCAODC_14625	0.67	-2.4
2,881,477	+	yohK	MCAODC_14625	0.67	-2.1
2,881,478	-	yohK	MCAODC_14625	0.67	-2.6
2,881,478	-	yohK	MCAODC_14625	0.67	-2.5
2,881,478	-	yohK	MCAODC_14625	0.67	-1.9
2,881,485	-	yohK	MCAODC_14625	0.68	-2.6
2,881,523	-	yohK	MCAODC_14625	0.73	-0.8
2,881,534	-	yohK	MCAODC_14625	0.75	-2.6
2,881,539	+	yohK	MCAODC_14625	0.76	-2.6
2,881,540	-	yohK	MCAODC_14625	0.76	-2.0
2,881,544	+	yohK	MCAODC_14625	0.76	-1.5
2,881,553	+	yohK	MCAODC_14625	0.78	-0.3
2,881,629	+	yohK	MCAODC_14625	0.89	-2.0
2,881,631	+	yohK	MCAODC_14625	0.89	-2.5
2,881,631	+	yohK	MCAODC_14625	0.89	-4.3
2,881,632	-	yohK	MCAODC_14625	0.89	-4.1
2,881,736	+				-0.7
2,881,736	+				-4.2
2,881,736	-				-0.3
2,881,737	-				-1.0
2,881,737	-				-1.5
2,881,850	-	yohJ	MCAODC_14630	0.37	-0.6
2,881,892	+	yohJ	MCAODC_14630	0.47	-1.3
2,881,892	+	yohJ	MCAODC_14630	0.47	-3.9
2,881,892	+	yohJ	MCAODC_14630	0.47	-2.1
2,881,894	+	yohJ	MCAODC_14630	0.48	-1.3
2,881,894	+	yohJ	MCAODC_14630	0.48	-2.2
2,881,906	-	yohJ	MCAODC_14630	0.51	-2.3
2,881,909	+	yohJ	MCAODC_14630	0.51	-3.0
2,881,909	+	yohJ	MCAODC_14630	0.51	-3.1
2,881,909	+	yohJ	MCAODC_14630	0.51	-3.0
2,881,909	+	yohJ	MCAODC_14630	0.51	-3.5
2,881,909	+	yohJ	MCAODC_14630	0.51	-2.7
2,881,909	+	yohJ	MCAODC_14630	0.51	-0.1
2,881,909	+	yohJ	MCAODC_14630	0.51	-0.6
2,881,910	-	yohJ	MCAODC_14630	0.52	-2.9
2,881,910	-	yohJ	MCAODC_14630	0.52	-2.5
2,881,910	-	yohJ	MCAODC_14630	0.52	-3.7
2,881,910	-	yohJ	MCAODC_14630	0.52	-1.7
2,881,910	-	yohJ	MCAODC_14630	0.52	-2.8
2,881,910	-	yohJ	MCAODC_14630	0.52	-1.5
2,881,910	-	yohJ	MCAODC_14630	0.52	-2.4
2,881,910	-	yohJ	MCAODC_14630	0.52	-1.9
2,882,036	-	yohJ	MCAODC_14630	0.83	-1.8
2,882,036	-	yohJ	MCAODC_14630	0.83	+1.1
2,882,047	+	yohJ	MCAODC_14630	0.86	-2.5
2,882,048	-	yohJ	MCAODC_14630	0.86	-2.3
2,882,071	+				-1.2
2,882,071	+				-1.9
2,882,072	-				-3.4
2,882,081	+				-3.1
2,882,081	+				-0.7
2,882,082	-				-1.1
2,882,102	+				-1.9
2,882,102	+				-2.6
2,882,135	-				-1.1
2,882,147	+				-0.8
2,882,184	+				+0.4
2,882,185	-				+0.4
2,882,235	-				+1.0
2,882,235	-				-2.5
2,882,266	+				-0.4
2,882,274	-				-0.5
2,882,314	-				-0.4
2,882,314	-				-1.0
2,882,326	+	lysR	MCAODC_14635	0.10	+0.5
2,882,326	+	lysR	MCAODC_14635	0.10	-0.4
2,882,344	+	lysR	MCAODC_14635	0.12	-0.7
2,882,369	+	lysR	MCAODC_14635	0.15	-0.6
2,882,387	-	lysR	MCAODC_14635	0.17	-0.6
2,882,397	+	lysR	MCAODC_14635	0.18	-1.1
2,882,407	-	lysR	MCAODC_14635	0.19	+0.4
2,882,407	-	lysR	MCAODC_14635	0.19	+2.3
2,882,419	+	lysR	MCAODC_14635	0.20	-0.3
2,882,420	-	lysR	MCAODC_14635	0.21	-1.9
2,882,476	+	lysR	MCAODC_14635	0.27	-0.2
2,882,489	-	lysR	MCAODC_14635	0.28	-0.1
2,882,499	+	lysR	MCAODC_14635	0.29	+0.2
2,882,505	+	lysR	MCAODC_14635	0.30	-0.5
2,882,506	-	lysR	MCAODC_14635	0.30	-1.5
2,882,508	+	lysR	MCAODC_14635	0.30	+0.1
2,882,508	+	lysR	MCAODC_14635	0.30	-0.4
2,882,508	+	lysR	MCAODC_14635	0.30	+0.3
2,882,582	+	lysR	MCAODC_14635	0.38	+3.5
2,882,620	+	lysR	MCAODC_14635	0.43	+2.5
2,882,620	+	lysR	MCAODC_14635	0.43	+0.9
2,882,621	-	lysR	MCAODC_14635	0.43	+0.7
2,882,634	-	lysR	MCAODC_14635	0.44	+0.6