Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt escJ and MCAODC_10360 are separated by 15 nucleotides MCAODC_10360 and ygeN overlap by 59 nucleotides ygeN and ygeN are separated by 16 nucleotides ygeN and ygeK are separated by 222 nucleotides ygeK and MCAODC_10380 are separated by 18 nucleotides
MCAODC_10355: escJ - EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein, at 2,064,859 to 2,065,593
escJ
MCAODC_10360: MCAODC_10360 - type III secretion apparatus protein OrgA/MxiK, at 2,065,609 to 2,066,190
_10360
MCAODC_10365: ygeN - Putative uncharacterized protein YgeN, at 2,066,132 to 2,066,392
ygeN
MCAODC_10370: ygeN - Putative uncharacterized protein YgeN, at 2,066,409 to 2,066,840
ygeN
MCAODC_10375: ygeK - Uncharacterized response regulatory protein YgeK, at 2,067,063 to 2,067,695
ygeK
MCAODC_10380: MCAODC_10380 - Transglycosylase SLT domain-containing protein, at 2,067,714 to 2,068,115
_10380
Position (kb)
2066
2067 Strain fitness (log2 ratio)
-2
-1
0
1 at 2065.550 kb on - strand at 2065.637 kb on - strand at 2065.684 kb on - strand, within MCAODC_10360 at 2065.690 kb on - strand, within MCAODC_10360 at 2065.713 kb on + strand, within MCAODC_10360 at 2065.918 kb on - strand, within MCAODC_10360 at 2066.014 kb on - strand, within MCAODC_10360 at 2066.530 kb on + strand, within ygeN at 2066.764 kb on - strand, within ygeN at 2066.838 kb on + strand at 2066.839 kb on - strand at 2066.954 kb on - strand at 2067.006 kb on - strand at 2067.170 kb on + strand, within ygeK at 2067.306 kb on - strand, within ygeK at 2067.332 kb on + strand, within ygeK at 2067.454 kb on + strand, within ygeK at 2067.671 kb on - strand at 2067.674 kb on + strand at 2067.829 kb on + strand, within MCAODC_10380
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 2,065,550 - -0.1 2,065,637 - -1.2 2,065,684 - MCAODC_10360 0.13 +0.0 2,065,690 - MCAODC_10360 0.14 +0.2 2,065,713 + MCAODC_10360 0.18 +0.2 2,065,918 - MCAODC_10360 0.53 -0.9 2,066,014 - MCAODC_10360 0.70 -0.6 2,066,530 + ygeN MCAODC_10370 0.28 -2.2 2,066,764 - ygeN MCAODC_10370 0.82 -0.2 2,066,838 + +0.2 2,066,839 - -1.1 2,066,954 - -0.5 2,067,006 - -0.6 2,067,170 + ygeK MCAODC_10375 0.17 -0.0 2,067,306 - ygeK MCAODC_10375 0.38 -0.3 2,067,332 + ygeK MCAODC_10375 0.42 +1.1 2,067,454 + ygeK MCAODC_10375 0.62 +0.2 2,067,671 - -2.2 2,067,674 + +0.3 2,067,829 + MCAODC_10380 0.29 -0.4
Or see this region's nucleotide sequence