Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaH and tatD overlap by 4 nucleotides tatD and tatC are separated by 41 nucleotides tatC and tatB are separated by 2 nucleotides tatB and tatA are separated by 3 nucleotides tatA and ubiB are separated by 78 nucleotides
MCAODC_04770: rfaH - transcription/translation regulatory transformer protein RfaH, at 965,020 to 965,508
rfaH
MCAODC_04775: tatD - 3'-5' ssDNA/RNA exonuclease TatD, at 965,505 to 966,287
tatD
MCAODC_04780: tatC - Sec-independent protein translocase subunit TatC, at 966,329 to 967,105
tatC
MCAODC_04785: tatB - Sec-independent protein translocase protein TatB, at 967,108 to 967,623
tatB
MCAODC_04790: tatA - Sec-independent protein translocase subunit TatA, at 967,627 to 967,896
tatA
MCAODC_04795: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 967,975 to 969,615
ubiB
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.448 kb on + strand, within rfaH at 965.448 kb on + strand, within rfaH at 965.448 kb on + strand, within rfaH at 965.457 kb on + strand, within rfaH at 965.457 kb on + strand, within rfaH at 965.458 kb on - strand, within rfaH at 965.458 kb on - strand, within rfaH at 965.460 kb on + strand at 965.461 kb on - strand at 965.469 kb on + strand at 965.470 kb on - strand at 965.507 kb on - strand at 965.537 kb on + strand at 965.537 kb on + strand at 965.538 kb on - strand at 965.538 kb on - strand at 965.538 kb on - strand at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.591 kb on + strand, within tatD at 965.592 kb on - strand, within tatD at 965.604 kb on - strand, within tatD at 965.671 kb on + strand, within tatD at 965.779 kb on + strand, within tatD at 965.779 kb on + strand, within tatD at 965.780 kb on - strand, within tatD at 965.874 kb on + strand, within tatD at 965.883 kb on - strand, within tatD at 965.912 kb on + strand, within tatD at 965.912 kb on + strand, within tatD at 965.912 kb on + strand, within tatD at 965.912 kb on + strand, within tatD at 965.912 kb on + strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.913 kb on - strand, within tatD at 965.928 kb on + strand, within tatD at 965.929 kb on - strand, within tatD at 965.947 kb on - strand, within tatD at 965.947 kb on - strand, within tatD at 965.947 kb on - strand, within tatD at 966.133 kb on + strand, within tatD at 966.193 kb on - strand, within tatD at 966.200 kb on + strand, within tatD at 966.200 kb on + strand, within tatD at 966.201 kb on - strand, within tatD at 966.225 kb on + strand at 966.225 kb on + strand at 966.226 kb on - strand at 966.269 kb on + strand at 966.293 kb on - strand at 966.293 kb on - strand at 966.299 kb on + strand at 966.299 kb on + strand at 966.299 kb on + strand at 966.299 kb on + strand at 966.299 kb on + strand at 966.300 kb on - strand at 966.300 kb on - strand at 966.391 kb on + strand at 966.392 kb on - strand at 966.392 kb on - strand at 966.399 kb on + strand at 966.399 kb on + strand at 966.399 kb on + strand at 966.400 kb on - strand at 966.400 kb on - strand at 966.438 kb on + strand, within tatC at 966.438 kb on + strand, within tatC at 966.439 kb on - strand, within tatC at 966.439 kb on - strand, within tatC at 966.523 kb on - strand, within tatC at 966.642 kb on - strand, within tatC at 966.751 kb on - strand, within tatC at 966.806 kb on - strand, within tatC at 966.877 kb on + strand, within tatC at 966.982 kb on - strand, within tatC at 967.098 kb on - strand at 967.116 kb on + strand at 967.117 kb on - strand at 967.247 kb on - strand, within tatB at 967.270 kb on - strand, within tatB at 967.288 kb on - strand, within tatB at 967.338 kb on - strand, within tatB at 967.338 kb on - strand, within tatB at 967.370 kb on - strand, within tatB at 967.370 kb on - strand, within tatB at 967.370 kb on - strand, within tatB at 967.595 kb on - strand at 967.595 kb on - strand at 967.595 kb on - strand at 967.847 kb on - strand, within tatA at 967.847 kb on - strand, within tatA at 967.871 kb on - strand at 967.882 kb on - strand at 967.882 kb on - strand at 967.897 kb on - strand at 967.897 kb on - strand at 967.897 kb on - strand at 967.897 kb on - strand at 967.897 kb on - strand at 967.897 kb on - strand at 967.924 kb on + strand at 967.925 kb on - strand at 967.940 kb on - strand at 967.940 kb on - strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.941 kb on + strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.942 kb on - strand at 967.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 965,448 + rfaH MCAODC_04770 0.88 -0.4 965,448 + rfaH MCAODC_04770 0.88 +0.7 965,448 + rfaH MCAODC_04770 0.88 -0.7 965,457 + rfaH MCAODC_04770 0.89 -1.8 965,457 + rfaH MCAODC_04770 0.89 +0.5 965,458 - rfaH MCAODC_04770 0.90 -1.4 965,458 - rfaH MCAODC_04770 0.90 -2.0 965,460 + +0.1 965,461 - +0.1 965,469 + -3.6 965,470 - +0.5 965,507 - -0.9 965,537 + +0.4 965,537 + -2.6 965,538 - +0.5 965,538 - -1.3 965,538 - -2.4 965,591 + tatD MCAODC_04775 0.11 -0.3 965,591 + tatD MCAODC_04775 0.11 +0.9 965,591 + tatD MCAODC_04775 0.11 -0.7 965,591 + tatD MCAODC_04775 0.11 +0.5 965,591 + tatD MCAODC_04775 0.11 -0.4 965,591 + tatD MCAODC_04775 0.11 -0.0 965,591 + tatD MCAODC_04775 0.11 +0.1 965,592 - tatD MCAODC_04775 0.11 +0.4 965,604 - tatD MCAODC_04775 0.13 +0.5 965,671 + tatD MCAODC_04775 0.21 -0.0 965,779 + tatD MCAODC_04775 0.35 +0.7 965,779 + tatD MCAODC_04775 0.35 -1.6 965,780 - tatD MCAODC_04775 0.35 +0.1 965,874 + tatD MCAODC_04775 0.47 -0.3 965,883 - tatD MCAODC_04775 0.48 +1.6 965,912 + tatD MCAODC_04775 0.52 +0.4 965,912 + tatD MCAODC_04775 0.52 +1.3 965,912 + tatD MCAODC_04775 0.52 -1.0 965,912 + tatD MCAODC_04775 0.52 +0.3 965,912 + tatD MCAODC_04775 0.52 -0.9 965,913 - tatD MCAODC_04775 0.52 +0.2 965,913 - tatD MCAODC_04775 0.52 -0.5 965,913 - tatD MCAODC_04775 0.52 +0.2 965,913 - tatD MCAODC_04775 0.52 -0.4 965,913 - tatD MCAODC_04775 0.52 +0.1 965,913 - tatD MCAODC_04775 0.52 +1.6 965,913 - tatD MCAODC_04775 0.52 +0.9 965,913 - tatD MCAODC_04775 0.52 -1.0 965,913 - tatD MCAODC_04775 0.52 +0.0 965,928 + tatD MCAODC_04775 0.54 -0.1 965,929 - tatD MCAODC_04775 0.54 +1.5 965,947 - tatD MCAODC_04775 0.56 +0.4 965,947 - tatD MCAODC_04775 0.56 +0.3 965,947 - tatD MCAODC_04775 0.56 +0.5 966,133 + tatD MCAODC_04775 0.80 +0.0 966,193 - tatD MCAODC_04775 0.88 +0.5 966,200 + tatD MCAODC_04775 0.89 -1.1 966,200 + tatD MCAODC_04775 0.89 +0.9 966,201 - tatD MCAODC_04775 0.89 -1.1 966,225 + +0.6 966,225 + -2.3 966,226 - +0.2 966,269 + +1.6 966,293 - +0.0 966,293 - +0.1 966,299 + +0.6 966,299 + -0.2 966,299 + +1.1 966,299 + -0.2 966,299 + -0.8 966,300 - +0.4 966,300 - -1.0 966,391 + -1.8 966,392 - -1.4 966,392 - +0.4 966,399 + +0.9 966,399 + -0.1 966,399 + -0.4 966,400 - -0.7 966,400 - +0.3 966,438 + tatC MCAODC_04780 0.14 +0.3 966,438 + tatC MCAODC_04780 0.14 +1.9 966,439 - tatC MCAODC_04780 0.14 -1.1 966,439 - tatC MCAODC_04780 0.14 +1.3 966,523 - tatC MCAODC_04780 0.25 -0.6 966,642 - tatC MCAODC_04780 0.40 -1.8 966,751 - tatC MCAODC_04780 0.54 +0.9 966,806 - tatC MCAODC_04780 0.61 +0.5 966,877 + tatC MCAODC_04780 0.71 -0.7 966,982 - tatC MCAODC_04780 0.84 -0.3 967,098 - -1.6 967,116 + -0.2 967,117 - -0.5 967,247 - tatB MCAODC_04785 0.27 -0.4 967,270 - tatB MCAODC_04785 0.31 -1.4 967,288 - tatB MCAODC_04785 0.35 -0.9 967,338 - tatB MCAODC_04785 0.45 -0.7 967,338 - tatB MCAODC_04785 0.45 -1.0 967,370 - tatB MCAODC_04785 0.51 -2.3 967,370 - tatB MCAODC_04785 0.51 -0.7 967,370 - tatB MCAODC_04785 0.51 -1.5 967,595 - -0.5 967,595 - -0.7 967,595 - +0.5 967,847 - tatA MCAODC_04790 0.81 -1.6 967,847 - tatA MCAODC_04790 0.81 -0.7 967,871 - -1.4 967,882 - +0.9 967,882 - -0.5 967,897 - -0.9 967,897 - -1.9 967,897 - -1.9 967,897 - -1.7 967,897 - -1.9 967,897 - -2.6 967,924 + -2.1 967,925 - +0.3 967,940 - -0.3 967,940 - -1.1 967,941 + -0.5 967,941 + -0.3 967,941 + -2.3 967,941 + -1.6 967,941 + -1.3 967,941 + +0.1 967,941 + +1.9 967,941 + -2.5 967,941 + +0.0 967,942 - -0.7 967,942 - -0.9 967,942 - -1.2 967,942 - -2.2 967,942 - -0.7 967,942 - +1.9 967,942 - -1.2 967,942 - +0.2 967,942 - +0.5 967,947 - +0.1
Or see this region's nucleotide sequence