Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srkA and yihD are separated by 76 nucleotides yihD and mobA are separated by 69 nucleotides mobA and MCAODC_04690 overlap by 19 nucleotides MCAODC_04690 and MCAODC_04695 are separated by 27 nucleotides MCAODC_04695 and 5S_rrna are separated by 101 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides
MCAODC_04675: srkA - stress response kinase SrkA, at 946,797 to 947,783
srkA
MCAODC_04680: yihD - Protein YihD, at 947,860 to 948,129
yihD
MCAODC_04685: mobA - molybdenum cofactor guanylyltransferase MobA, at 948,199 to 948,783
mobA
MCAODC_04690: MCAODC_04690 - Molybdopterin-guanine dinucleotide biosynthesis protein B, at 948,765 to 949,025
_04690
MCAODC_04695: MCAODC_04695 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 949,053 to 949,292
_04695
MCAODC_04700: 5S_rrna - 5S ribosomal RNA, at 949,394 to 949,509
_rrna
MCAODC_04705: 23S_rrna - 23S ribosomal RNA, at 949,604 to 952,508
_rrna
Position (kb) 948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 947.295 kb on - strand, within srkA at 947.295 kb on - strand, within srkA at 947.329 kb on + strand, within srkA at 947.360 kb on + strand, within srkA at 947.390 kb on + strand, within srkA at 947.390 kb on + strand, within srkA at 947.391 kb on - strand, within srkA at 947.401 kb on + strand, within srkA at 947.551 kb on - strand, within srkA at 947.551 kb on - strand, within srkA at 947.660 kb on - strand, within srkA at 947.660 kb on - strand, within srkA at 947.674 kb on + strand, within srkA at 947.674 kb on + strand, within srkA at 947.675 kb on - strand, within srkA at 947.681 kb on + strand, within srkA at 947.765 kb on + strand at 947.765 kb on + strand at 947.803 kb on + strand at 947.852 kb on - strand at 947.872 kb on + strand at 947.873 kb on - strand at 947.916 kb on - strand, within yihD at 947.975 kb on + strand, within yihD at 947.975 kb on + strand, within yihD at 947.975 kb on + strand, within yihD at 947.975 kb on + strand, within yihD at 948.060 kb on + strand, within yihD at 948.103 kb on - strand at 948.129 kb on + strand at 948.130 kb on - strand at 948.130 kb on - strand at 948.132 kb on + strand at 948.132 kb on + strand at 948.132 kb on + strand at 948.133 kb on - strand at 948.133 kb on - strand at 948.133 kb on - strand at 948.133 kb on - strand at 948.133 kb on - strand at 948.142 kb on + strand at 948.142 kb on + strand at 948.143 kb on - strand at 948.143 kb on - strand at 948.162 kb on + strand at 948.162 kb on + strand at 948.163 kb on - strand at 948.182 kb on + strand at 948.182 kb on + strand at 948.219 kb on - strand at 948.266 kb on + strand, within mobA at 948.267 kb on - strand, within mobA at 948.271 kb on - strand, within mobA at 948.287 kb on + strand, within mobA at 948.288 kb on - strand, within mobA at 948.456 kb on - strand, within mobA at 948.508 kb on + strand, within mobA at 948.509 kb on - strand, within mobA at 948.509 kb on - strand, within mobA at 948.509 kb on - strand, within mobA at 948.600 kb on + strand, within mobA at 948.606 kb on + strand, within mobA at 948.606 kb on + strand, within mobA at 948.611 kb on + strand, within mobA at 948.611 kb on + strand, within mobA at 948.612 kb on - strand, within mobA at 948.612 kb on - strand, within mobA at 948.633 kb on - strand, within mobA at 948.643 kb on + strand, within mobA at 948.643 kb on + strand, within mobA at 948.643 kb on + strand, within mobA at 948.678 kb on + strand, within mobA at 948.679 kb on - strand, within mobA at 948.679 kb on - strand, within mobA at 948.720 kb on + strand, within mobA at 948.720 kb on + strand, within mobA at 948.721 kb on - strand, within mobA at 948.721 kb on - strand, within mobA at 948.744 kb on + strand at 948.784 kb on + strand at 948.790 kb on + strand at 948.887 kb on + strand, within MCAODC_04690 at 948.893 kb on + strand, within MCAODC_04690 at 948.894 kb on - strand, within MCAODC_04690 at 948.894 kb on - strand, within MCAODC_04690 at 948.894 kb on - strand, within MCAODC_04690 at 948.918 kb on - strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.932 kb on + strand, within MCAODC_04690 at 948.933 kb on - strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.936 kb on + strand, within MCAODC_04690 at 948.937 kb on - strand, within MCAODC_04690 at 948.937 kb on - strand, within MCAODC_04690 at 948.937 kb on - strand, within MCAODC_04690 at 949.023 kb on + strand at 949.023 kb on + strand at 949.024 kb on - strand at 949.094 kb on + strand, within MCAODC_04695 at 949.094 kb on + strand, within MCAODC_04695 at 949.094 kb on + strand, within MCAODC_04695 at 949.094 kb on + strand, within MCAODC_04695 at 949.095 kb on - strand, within MCAODC_04695 at 949.095 kb on - strand, within MCAODC_04695 at 949.165 kb on + strand, within MCAODC_04695 at 949.165 kb on + strand, within MCAODC_04695 at 949.165 kb on + strand, within MCAODC_04695 at 949.166 kb on - strand, within MCAODC_04695 at 949.179 kb on - strand, within MCAODC_04695 at 949.205 kb on + strand, within MCAODC_04695 at 949.230 kb on - strand, within MCAODC_04695 at 949.232 kb on + strand, within MCAODC_04695 at 949.232 kb on + strand, within MCAODC_04695 at 949.232 kb on + strand, within MCAODC_04695 at 949.232 kb on + strand, within MCAODC_04695 at 949.233 kb on - strand, within MCAODC_04695 at 949.233 kb on - strand, within MCAODC_04695 at 949.233 kb on - strand, within MCAODC_04695 at 949.233 kb on - strand, within MCAODC_04695 at 949.233 kb on - strand, within MCAODC_04695 at 949.300 kb on + strand at 949.300 kb on + strand at 949.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 947,295 - srkA MCAODC_04675 0.50 -0.1 947,295 - srkA MCAODC_04675 0.50 +0.4 947,329 + srkA MCAODC_04675 0.54 -0.8 947,360 + srkA MCAODC_04675 0.57 -1.0 947,390 + srkA MCAODC_04675 0.60 -0.3 947,390 + srkA MCAODC_04675 0.60 +1.4 947,391 - srkA MCAODC_04675 0.60 -1.3 947,401 + srkA MCAODC_04675 0.61 -0.0 947,551 - srkA MCAODC_04675 0.76 -1.3 947,551 - srkA MCAODC_04675 0.76 +0.1 947,660 - srkA MCAODC_04675 0.87 -0.7 947,660 - srkA MCAODC_04675 0.87 +0.5 947,674 + srkA MCAODC_04675 0.89 -0.2 947,674 + srkA MCAODC_04675 0.89 +0.3 947,675 - srkA MCAODC_04675 0.89 -0.3 947,681 + srkA MCAODC_04675 0.90 -0.2 947,765 + -2.1 947,765 + +0.9 947,803 + +0.2 947,852 - -1.3 947,872 + +1.2 947,873 - -1.1 947,916 - yihD MCAODC_04680 0.21 -0.0 947,975 + yihD MCAODC_04680 0.43 +0.2 947,975 + yihD MCAODC_04680 0.43 +0.8 947,975 + yihD MCAODC_04680 0.43 +1.2 947,975 + yihD MCAODC_04680 0.43 +1.5 948,060 + yihD MCAODC_04680 0.74 -1.9 948,103 - +0.3 948,129 + -0.5 948,130 - +0.8 948,130 - +2.6 948,132 + -1.1 948,132 + +0.3 948,132 + -1.5 948,133 - +0.4 948,133 - -1.2 948,133 - +0.4 948,133 - +0.8 948,133 - +2.3 948,142 + +0.6 948,142 + +1.1 948,143 - -0.8 948,143 - -0.5 948,162 + -0.3 948,162 + -0.4 948,163 - +0.3 948,182 + -1.9 948,182 + -0.3 948,219 - -2.3 948,266 + mobA MCAODC_04685 0.11 -1.5 948,267 - mobA MCAODC_04685 0.12 -1.5 948,271 - mobA MCAODC_04685 0.12 +0.6 948,287 + mobA MCAODC_04685 0.15 -1.0 948,288 - mobA MCAODC_04685 0.15 -1.8 948,456 - mobA MCAODC_04685 0.44 -0.7 948,508 + mobA MCAODC_04685 0.53 -2.4 948,509 - mobA MCAODC_04685 0.53 +0.0 948,509 - mobA MCAODC_04685 0.53 -1.0 948,509 - mobA MCAODC_04685 0.53 -3.1 948,600 + mobA MCAODC_04685 0.69 -1.9 948,606 + mobA MCAODC_04685 0.70 -2.2 948,606 + mobA MCAODC_04685 0.70 -1.4 948,611 + mobA MCAODC_04685 0.70 -0.8 948,611 + mobA MCAODC_04685 0.70 -2.4 948,612 - mobA MCAODC_04685 0.71 -0.5 948,612 - mobA MCAODC_04685 0.71 +0.3 948,633 - mobA MCAODC_04685 0.74 -0.3 948,643 + mobA MCAODC_04685 0.76 -2.0 948,643 + mobA MCAODC_04685 0.76 -0.4 948,643 + mobA MCAODC_04685 0.76 -1.2 948,678 + mobA MCAODC_04685 0.82 -1.2 948,679 - mobA MCAODC_04685 0.82 -1.1 948,679 - mobA MCAODC_04685 0.82 -0.7 948,720 + mobA MCAODC_04685 0.89 -1.1 948,720 + mobA MCAODC_04685 0.89 +0.1 948,721 - mobA MCAODC_04685 0.89 -0.6 948,721 - mobA MCAODC_04685 0.89 -2.0 948,744 + -2.1 948,784 + -0.1 948,790 + -1.0 948,887 + MCAODC_04690 0.47 -1.0 948,893 + MCAODC_04690 0.49 -0.4 948,894 - MCAODC_04690 0.49 -0.0 948,894 - MCAODC_04690 0.49 -1.3 948,894 - MCAODC_04690 0.49 +0.4 948,918 - MCAODC_04690 0.59 +0.6 948,932 + MCAODC_04690 0.64 +0.4 948,932 + MCAODC_04690 0.64 +0.2 948,932 + MCAODC_04690 0.64 -1.0 948,932 + MCAODC_04690 0.64 +0.1 948,932 + MCAODC_04690 0.64 +1.0 948,932 + MCAODC_04690 0.64 +1.1 948,933 - MCAODC_04690 0.64 -0.5 948,936 + MCAODC_04690 0.66 +0.3 948,936 + MCAODC_04690 0.66 +0.1 948,936 + MCAODC_04690 0.66 -0.9 948,936 + MCAODC_04690 0.66 -0.9 948,936 + MCAODC_04690 0.66 +0.7 948,936 + MCAODC_04690 0.66 -1.5 948,936 + MCAODC_04690 0.66 +0.1 948,937 - MCAODC_04690 0.66 +0.1 948,937 - MCAODC_04690 0.66 +0.9 948,937 - MCAODC_04690 0.66 -2.9 949,023 + -0.0 949,023 + +0.3 949,024 - -1.2 949,094 + MCAODC_04695 0.17 -0.0 949,094 + MCAODC_04695 0.17 -0.5 949,094 + MCAODC_04695 0.17 -1.7 949,094 + MCAODC_04695 0.17 +0.1 949,095 - MCAODC_04695 0.17 -1.1 949,095 - MCAODC_04695 0.17 +0.3 949,165 + MCAODC_04695 0.47 -2.1 949,165 + MCAODC_04695 0.47 -3.0 949,165 + MCAODC_04695 0.47 -0.5 949,166 - MCAODC_04695 0.47 +0.5 949,179 - MCAODC_04695 0.53 +0.4 949,205 + MCAODC_04695 0.63 +1.7 949,230 - MCAODC_04695 0.74 +1.5 949,232 + MCAODC_04695 0.75 +0.1 949,232 + MCAODC_04695 0.75 +2.5 949,232 + MCAODC_04695 0.75 -1.1 949,232 + MCAODC_04695 0.75 -0.2 949,233 - MCAODC_04695 0.75 +0.5 949,233 - MCAODC_04695 0.75 -0.8 949,233 - MCAODC_04695 0.75 +1.9 949,233 - MCAODC_04695 0.75 +0.1 949,233 - MCAODC_04695 0.75 -0.2 949,300 + +2.9 949,300 + +0.9 949,300 + +0.2
Or see this region's nucleotide sequence