Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpxP and cpxR are separated by 149 nucleotides cpxR and cpxA overlap by 4 nucleotides cpxA and yiiM are separated by 105 nucleotides yiiM and kdgT are separated by 148 nucleotides
MCAODC_04340: cpxP - cell-envelope stress modulator CpxP, at 879,872 to 880,372
cpxP
MCAODC_04345: cpxR - envelope stress response regulator transcription factor CpxR, at 880,522 to 881,220
cpxR
MCAODC_04350: cpxA - envelope stress sensor histidine kinase CpxA, at 881,217 to 882,590
cpxA
MCAODC_04360: yiiM - 6-hydroxyaminopurine reductase, at 882,696 to 883,370
yiiM
MCAODC_04365: kdgT - 2-keto-3-deoxygluconate transporter, at 883,519 to 884,502
kdgT
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 880.226 kb on + strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.320 kb on - strand, within cpxP at 880.360 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.454 kb on - strand at 880.463 kb on + strand at 880.464 kb on - strand at 880.464 kb on - strand at 880.512 kb on + strand at 880.516 kb on + strand at 880.538 kb on + strand at 880.538 kb on + strand at 880.539 kb on - strand at 880.572 kb on - strand at 880.661 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.677 kb on - strand, within cpxR at 880.699 kb on - strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.710 kb on - strand, within cpxR at 880.710 kb on - strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.747 kb on - strand, within cpxR at 880.810 kb on + strand, within cpxR at 880.810 kb on + strand, within cpxR at 880.852 kb on - strand, within cpxR at 880.852 kb on - strand, within cpxR at 880.937 kb on + strand, within cpxR at 880.938 kb on - strand, within cpxR at 881.017 kb on + strand, within cpxR at 881.017 kb on + strand, within cpxR at 881.018 kb on - strand, within cpxR at 881.018 kb on - strand, within cpxR at 881.221 kb on + strand at 881.222 kb on - strand at 881.222 kb on - strand at 881.230 kb on + strand at 881.231 kb on - strand at 881.296 kb on + strand at 881.410 kb on + strand, within cpxA at 881.411 kb on - strand, within cpxA at 881.445 kb on - strand, within cpxA at 881.534 kb on + strand, within cpxA at 881.540 kb on + strand, within cpxA at 881.540 kb on + strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.637 kb on + strand, within cpxA at 881.688 kb on - strand, within cpxA at 881.692 kb on + strand, within cpxA at 881.692 kb on + strand, within cpxA at 881.693 kb on - strand, within cpxA at 881.711 kb on - strand, within cpxA at 881.713 kb on + strand, within cpxA at 881.714 kb on - strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.790 kb on - strand, within cpxA at 881.951 kb on + strand, within cpxA at 881.996 kb on + strand, within cpxA at 882.104 kb on + strand, within cpxA at 882.105 kb on - strand, within cpxA at 882.105 kb on - strand, within cpxA at 882.219 kb on - strand, within cpxA at 882.219 kb on - strand, within cpxA at 882.294 kb on - strand, within cpxA at 882.340 kb on + strand, within cpxA at 882.345 kb on - strand, within cpxA at 882.345 kb on - strand, within cpxA at 882.345 kb on - strand, within cpxA at 882.345 kb on - strand, within cpxA at 882.426 kb on + strand, within cpxA at 882.550 kb on + strand at 882.551 kb on - strand at 882.576 kb on + strand at 882.578 kb on + strand at 882.578 kb on + strand at 882.578 kb on + strand at 882.579 kb on - strand at 882.666 kb on + strand at 882.667 kb on - strand at 882.674 kb on + strand at 882.697 kb on + strand at 882.798 kb on + strand, within yiiM at 882.799 kb on - strand, within yiiM at 882.808 kb on + strand, within yiiM at 882.808 kb on + strand, within yiiM at 882.809 kb on - strand, within yiiM at 882.830 kb on + strand, within yiiM at 882.830 kb on + strand, within yiiM at 882.831 kb on - strand, within yiiM at 882.831 kb on - strand, within yiiM at 882.831 kb on - strand, within yiiM at 882.933 kb on - strand, within yiiM at 882.933 kb on - strand, within yiiM at 882.933 kb on - strand, within yiiM at 882.933 kb on - strand, within yiiM at 882.934 kb on + strand, within yiiM at 882.934 kb on + strand, within yiiM at 882.934 kb on + strand, within yiiM at 882.934 kb on + strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.935 kb on - strand, within yiiM at 882.975 kb on + strand, within yiiM at 883.041 kb on + strand, within yiiM at 883.041 kb on + strand, within yiiM at 883.074 kb on - strand, within yiiM at 883.075 kb on + strand, within yiiM at 883.076 kb on - strand, within yiiM at 883.076 kb on - strand, within yiiM at 883.076 kb on - strand, within yiiM at 883.076 kb on - strand, within yiiM at 883.177 kb on + strand, within yiiM at 883.177 kb on + strand, within yiiM at 883.178 kb on - strand, within yiiM at 883.178 kb on - strand, within yiiM at 883.178 kb on - strand, within yiiM at 883.178 kb on - strand, within yiiM at 883.178 kb on - strand, within yiiM at 883.328 kb on - strand at 883.348 kb on + strand at 883.349 kb on - strand at 883.349 kb on - strand at 883.349 kb on - strand at 883.349 kb on - strand at 883.349 kb on - strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.401 kb on + strand at 883.408 kb on + strand at 883.408 kb on + strand at 883.408 kb on + strand at 883.409 kb on - strand at 883.412 kb on + strand at 883.412 kb on + strand at 883.412 kb on + strand at 883.413 kb on - strand at 883.417 kb on + strand at 883.443 kb on - strand at 883.446 kb on + strand at 883.447 kb on - strand at 883.484 kb on + strand at 883.484 kb on + strand at 883.484 kb on + strand at 883.484 kb on + strand at 883.485 kb on - strand at 883.485 kb on - strand at 883.485 kb on - strand at 883.485 kb on - strand at 883.569 kb on + strand at 883.570 kb on - strand at 883.581 kb on + strand at 883.582 kb on - strand at 883.582 kb on - strand at 883.588 kb on - strand at 883.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 880,226 + cpxP MCAODC_04340 0.71 -0.0 880,227 - cpxP MCAODC_04340 0.71 -0.1 880,227 - cpxP MCAODC_04340 0.71 -1.6 880,240 + cpxP MCAODC_04340 0.73 -0.6 880,240 + cpxP MCAODC_04340 0.73 +0.8 880,240 + cpxP MCAODC_04340 0.73 -0.5 880,240 + cpxP MCAODC_04340 0.73 -1.2 880,240 + cpxP MCAODC_04340 0.73 -0.0 880,241 - cpxP MCAODC_04340 0.74 +0.1 880,241 - cpxP MCAODC_04340 0.74 -0.3 880,241 - cpxP MCAODC_04340 0.74 +0.7 880,241 - cpxP MCAODC_04340 0.74 -2.3 880,241 - cpxP MCAODC_04340 0.74 -1.0 880,241 - cpxP MCAODC_04340 0.74 +0.2 880,252 + cpxP MCAODC_04340 0.76 +0.6 880,252 + cpxP MCAODC_04340 0.76 +0.0 880,320 - cpxP MCAODC_04340 0.89 -1.3 880,360 + -2.1 880,364 + +2.3 880,364 + +0.5 880,364 + -0.7 880,364 + +0.4 880,364 + -1.2 880,364 + -2.9 880,364 + -0.6 880,364 + +0.7 880,365 - -1.2 880,365 - +0.8 880,365 - +0.3 880,365 - -1.6 880,365 - -0.8 880,365 - -1.3 880,365 - -1.6 880,365 - +0.6 880,365 - -0.8 880,365 - +0.4 880,365 - +0.8 880,365 - -1.3 880,365 - +0.3 880,454 - -0.7 880,463 + +0.4 880,464 - -1.3 880,464 - -0.1 880,512 + -2.6 880,516 + -0.5 880,538 + -0.9 880,538 + -0.6 880,539 - -0.2 880,572 - +1.0 880,661 + cpxR MCAODC_04345 0.20 -2.0 880,676 + cpxR MCAODC_04345 0.22 -0.5 880,676 + cpxR MCAODC_04345 0.22 +0.3 880,676 + cpxR MCAODC_04345 0.22 -2.1 880,677 - cpxR MCAODC_04345 0.22 +0.3 880,699 - cpxR MCAODC_04345 0.25 -2.0 880,709 + cpxR MCAODC_04345 0.27 -0.9 880,709 + cpxR MCAODC_04345 0.27 -2.6 880,710 - cpxR MCAODC_04345 0.27 -0.7 880,710 - cpxR MCAODC_04345 0.27 +0.9 880,746 + cpxR MCAODC_04345 0.32 -0.9 880,746 + cpxR MCAODC_04345 0.32 +0.9 880,746 + cpxR MCAODC_04345 0.32 +0.7 880,747 - cpxR MCAODC_04345 0.32 -0.7 880,810 + cpxR MCAODC_04345 0.41 -0.5 880,810 + cpxR MCAODC_04345 0.41 +1.3 880,852 - cpxR MCAODC_04345 0.47 -1.0 880,852 - cpxR MCAODC_04345 0.47 +1.4 880,937 + cpxR MCAODC_04345 0.59 -0.8 880,938 - cpxR MCAODC_04345 0.60 -2.0 881,017 + cpxR MCAODC_04345 0.71 +1.1 881,017 + cpxR MCAODC_04345 0.71 -0.1 881,018 - cpxR MCAODC_04345 0.71 -0.3 881,018 - cpxR MCAODC_04345 0.71 +0.3 881,221 + +1.3 881,222 - -1.9 881,222 - -3.1 881,230 + -1.3 881,231 - -0.5 881,296 + -2.3 881,410 + cpxA MCAODC_04350 0.14 -3.6 881,411 - cpxA MCAODC_04350 0.14 -1.6 881,445 - cpxA MCAODC_04350 0.17 -1.0 881,534 + cpxA MCAODC_04350 0.23 -1.0 881,540 + cpxA MCAODC_04350 0.24 -1.1 881,540 + cpxA MCAODC_04350 0.24 -2.2 881,634 - cpxA MCAODC_04350 0.30 -1.3 881,634 - cpxA MCAODC_04350 0.30 -0.3 881,634 - cpxA MCAODC_04350 0.30 -0.3 881,634 - cpxA MCAODC_04350 0.30 -0.0 881,637 + cpxA MCAODC_04350 0.31 +0.4 881,688 - cpxA MCAODC_04350 0.34 -1.0 881,692 + cpxA MCAODC_04350 0.35 -1.3 881,692 + cpxA MCAODC_04350 0.35 -0.6 881,693 - cpxA MCAODC_04350 0.35 -1.8 881,711 - cpxA MCAODC_04350 0.36 -0.2 881,713 + cpxA MCAODC_04350 0.36 -1.6 881,714 - cpxA MCAODC_04350 0.36 -1.8 881,789 + cpxA MCAODC_04350 0.42 -1.4 881,789 + cpxA MCAODC_04350 0.42 -2.1 881,789 + cpxA MCAODC_04350 0.42 -2.0 881,790 - cpxA MCAODC_04350 0.42 -2.4 881,951 + cpxA MCAODC_04350 0.53 -1.0 881,996 + cpxA MCAODC_04350 0.57 -0.4 882,104 + cpxA MCAODC_04350 0.65 +0.0 882,105 - cpxA MCAODC_04350 0.65 -3.0 882,105 - cpxA MCAODC_04350 0.65 +0.9 882,219 - cpxA MCAODC_04350 0.73 -3.5 882,219 - cpxA MCAODC_04350 0.73 +0.7 882,294 - cpxA MCAODC_04350 0.78 +0.0 882,340 + cpxA MCAODC_04350 0.82 -1.8 882,345 - cpxA MCAODC_04350 0.82 -0.5 882,345 - cpxA MCAODC_04350 0.82 +3.9 882,345 - cpxA MCAODC_04350 0.82 +1.9 882,345 - cpxA MCAODC_04350 0.82 -0.5 882,426 + cpxA MCAODC_04350 0.88 -0.9 882,550 + -2.6 882,551 - -1.2 882,576 + +0.7 882,578 + -1.8 882,578 + +0.1 882,578 + -0.3 882,579 - +0.0 882,666 + +0.6 882,667 - -1.4 882,674 + +0.2 882,697 + +0.1 882,798 + yiiM MCAODC_04360 0.15 +1.2 882,799 - yiiM MCAODC_04360 0.15 +0.3 882,808 + yiiM MCAODC_04360 0.17 -2.1 882,808 + yiiM MCAODC_04360 0.17 +1.0 882,809 - yiiM MCAODC_04360 0.17 -1.1 882,830 + yiiM MCAODC_04360 0.20 +1.6 882,830 + yiiM MCAODC_04360 0.20 -2.1 882,831 - yiiM MCAODC_04360 0.20 -0.4 882,831 - yiiM MCAODC_04360 0.20 +0.5 882,831 - yiiM MCAODC_04360 0.20 -1.6 882,933 - yiiM MCAODC_04360 0.35 -0.5 882,933 - yiiM MCAODC_04360 0.35 +0.4 882,933 - yiiM MCAODC_04360 0.35 -0.4 882,933 - yiiM MCAODC_04360 0.35 -1.5 882,934 + yiiM MCAODC_04360 0.35 -0.0 882,934 + yiiM MCAODC_04360 0.35 +0.4 882,934 + yiiM MCAODC_04360 0.35 +0.5 882,934 + yiiM MCAODC_04360 0.35 +0.6 882,935 - yiiM MCAODC_04360 0.35 -1.2 882,935 - yiiM MCAODC_04360 0.35 -0.8 882,935 - yiiM MCAODC_04360 0.35 +0.1 882,935 - yiiM MCAODC_04360 0.35 +0.8 882,935 - yiiM MCAODC_04360 0.35 +1.6 882,935 - yiiM MCAODC_04360 0.35 -2.6 882,935 - yiiM MCAODC_04360 0.35 -1.6 882,975 + yiiM MCAODC_04360 0.41 +1.2 883,041 + yiiM MCAODC_04360 0.51 +1.3 883,041 + yiiM MCAODC_04360 0.51 -0.1 883,074 - yiiM MCAODC_04360 0.56 -1.0 883,075 + yiiM MCAODC_04360 0.56 +1.1 883,076 - yiiM MCAODC_04360 0.56 -0.2 883,076 - yiiM MCAODC_04360 0.56 +0.3 883,076 - yiiM MCAODC_04360 0.56 +0.4 883,076 - yiiM MCAODC_04360 0.56 -0.9 883,177 + yiiM MCAODC_04360 0.71 -0.2 883,177 + yiiM MCAODC_04360 0.71 +0.8 883,178 - yiiM MCAODC_04360 0.71 -1.0 883,178 - yiiM MCAODC_04360 0.71 -0.4 883,178 - yiiM MCAODC_04360 0.71 -1.4 883,178 - yiiM MCAODC_04360 0.71 +0.6 883,178 - yiiM MCAODC_04360 0.71 -0.8 883,328 - +0.2 883,348 + -0.5 883,349 - -0.6 883,349 - +1.5 883,349 - +0.7 883,349 - +0.9 883,349 - +1.6 883,350 + -1.1 883,350 + +0.8 883,350 + -1.2 883,350 + +0.8 883,350 + +0.7 883,350 + -0.5 883,350 + -0.0 883,351 - +0.9 883,351 - -0.0 883,351 - -0.6 883,351 - -2.4 883,351 - -1.6 883,351 - +0.3 883,401 + -2.1 883,408 + +0.1 883,408 + +0.9 883,408 + +0.7 883,409 - -0.6 883,412 + -0.6 883,412 + +0.0 883,412 + +1.9 883,413 - -0.7 883,417 + -2.9 883,443 - -0.8 883,446 + +0.7 883,447 - -0.9 883,484 + +1.6 883,484 + -0.4 883,484 + -0.0 883,484 + +0.1 883,485 - -0.3 883,485 - -0.9 883,485 - +1.0 883,485 - +0.5 883,569 + +0.3 883,570 - -0.2 883,581 + -0.9 883,582 - -0.2 883,582 - -0.6 883,588 - -0.2 883,588 - +0.1
Or see this region's nucleotide sequence