Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fieF and cpxP are separated by 148 nucleotides cpxP and cpxR are separated by 149 nucleotides cpxR and cpxA overlap by 4 nucleotides
MCAODC_04335: fieF - CDF family cation-efflux transporter FieF, at 878,821 to 879,723
fieF
MCAODC_04340: cpxP - cell-envelope stress modulator CpxP, at 879,872 to 880,372
cpxP
MCAODC_04345: cpxR - envelope stress response regulator transcription factor CpxR, at 880,522 to 881,220
cpxR
MCAODC_04350: cpxA - envelope stress sensor histidine kinase CpxA, at 881,217 to 882,590
cpxA
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.609 kb on + strand, within fieF at 879.610 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.627 kb on - strand, within fieF at 879.655 kb on + strand at 879.724 kb on - strand at 879.727 kb on + strand at 879.728 kb on - strand at 879.728 kb on - strand at 879.749 kb on + strand at 879.750 kb on - strand at 879.750 kb on - strand at 879.750 kb on - strand at 879.752 kb on + strand at 879.752 kb on + strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.755 kb on - strand at 879.755 kb on - strand at 879.782 kb on + strand at 879.850 kb on - strand at 879.892 kb on + strand at 879.892 kb on + strand at 879.892 kb on + strand at 879.893 kb on - strand at 879.893 kb on - strand at 879.893 kb on - strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.903 kb on - strand at 879.903 kb on - strand at 880.011 kb on + strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.153 kb on + strand, within cpxP at 880.186 kb on + strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.226 kb on + strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.320 kb on - strand, within cpxP at 880.360 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.454 kb on - strand at 880.463 kb on + strand at 880.464 kb on - strand at 880.464 kb on - strand at 880.512 kb on + strand at 880.516 kb on + strand at 880.538 kb on + strand at 880.538 kb on + strand at 880.539 kb on - strand at 880.572 kb on - strand at 880.661 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.677 kb on - strand, within cpxR at 880.699 kb on - strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.710 kb on - strand, within cpxR at 880.710 kb on - strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.746 kb on + strand, within cpxR at 880.747 kb on - strand, within cpxR at 880.810 kb on + strand, within cpxR at 880.810 kb on + strand, within cpxR at 880.852 kb on - strand, within cpxR at 880.852 kb on - strand, within cpxR at 880.937 kb on + strand, within cpxR at 880.938 kb on - strand, within cpxR at 881.017 kb on + strand, within cpxR at 881.017 kb on + strand, within cpxR at 881.018 kb on - strand, within cpxR at 881.018 kb on - strand, within cpxR at 881.221 kb on + strand at 881.222 kb on - strand at 881.222 kb on - strand at 881.230 kb on + strand at 881.231 kb on - strand at 881.296 kb on + strand at 881.410 kb on + strand, within cpxA at 881.411 kb on - strand, within cpxA at 881.445 kb on - strand, within cpxA at 881.534 kb on + strand, within cpxA at 881.540 kb on + strand, within cpxA at 881.540 kb on + strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.634 kb on - strand, within cpxA at 881.637 kb on + strand, within cpxA at 881.688 kb on - strand, within cpxA at 881.692 kb on + strand, within cpxA at 881.692 kb on + strand, within cpxA at 881.693 kb on - strand, within cpxA at 881.711 kb on - strand, within cpxA at 881.713 kb on + strand, within cpxA at 881.714 kb on - strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.789 kb on + strand, within cpxA at 881.790 kb on - strand, within cpxA at 881.951 kb on + strand, within cpxA at 881.996 kb on + strand, within cpxA at 882.104 kb on + strand, within cpxA at 882.105 kb on - strand, within cpxA at 882.105 kb on - strand, within cpxA at 882.219 kb on - strand, within cpxA at 882.219 kb on - strand, within cpxA
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 879,609 + fieF MCAODC_04335 0.87 +0.2 879,610 - fieF MCAODC_04335 0.87 -0.0 879,625 - fieF MCAODC_04335 0.89 -0.6 879,625 - fieF MCAODC_04335 0.89 -0.9 879,626 + fieF MCAODC_04335 0.89 -0.6 879,626 + fieF MCAODC_04335 0.89 +0.8 879,626 + fieF MCAODC_04335 0.89 -1.5 879,626 + fieF MCAODC_04335 0.89 +1.3 879,627 - fieF MCAODC_04335 0.89 -0.5 879,655 + +0.3 879,724 - -0.0 879,727 + -1.1 879,728 - +0.8 879,728 - -0.7 879,749 + -0.1 879,750 - +0.9 879,750 - +0.3 879,750 - -0.4 879,752 + +0.3 879,752 + -1.0 879,753 - +0.1 879,753 - +0.7 879,753 - -2.5 879,753 - -0.6 879,753 - -1.6 879,755 - -1.1 879,755 - -0.2 879,782 + -1.1 879,850 - +0.3 879,892 + +0.5 879,892 + +1.9 879,892 + -0.6 879,893 - -0.4 879,893 - +0.1 879,893 - +0.4 879,902 + +0.5 879,902 + -0.5 879,902 + +0.5 879,902 + +1.3 879,903 - -1.3 879,903 - +1.2 880,011 + cpxP MCAODC_04340 0.28 -1.5 880,012 - cpxP MCAODC_04340 0.28 +0.2 880,012 - cpxP MCAODC_04340 0.28 +0.2 880,012 - cpxP MCAODC_04340 0.28 -1.3 880,153 + cpxP MCAODC_04340 0.56 +0.8 880,186 + cpxP MCAODC_04340 0.63 -0.1 880,187 - cpxP MCAODC_04340 0.63 -0.1 880,187 - cpxP MCAODC_04340 0.63 -0.7 880,187 - cpxP MCAODC_04340 0.63 +0.8 880,187 - cpxP MCAODC_04340 0.63 +0.1 880,187 - cpxP MCAODC_04340 0.63 +1.5 880,226 + cpxP MCAODC_04340 0.71 -0.0 880,227 - cpxP MCAODC_04340 0.71 -0.1 880,227 - cpxP MCAODC_04340 0.71 -1.6 880,240 + cpxP MCAODC_04340 0.73 -0.6 880,240 + cpxP MCAODC_04340 0.73 +0.8 880,240 + cpxP MCAODC_04340 0.73 -0.5 880,240 + cpxP MCAODC_04340 0.73 -1.2 880,240 + cpxP MCAODC_04340 0.73 -0.0 880,241 - cpxP MCAODC_04340 0.74 +0.1 880,241 - cpxP MCAODC_04340 0.74 -0.3 880,241 - cpxP MCAODC_04340 0.74 +0.7 880,241 - cpxP MCAODC_04340 0.74 -2.3 880,241 - cpxP MCAODC_04340 0.74 -1.0 880,241 - cpxP MCAODC_04340 0.74 +0.2 880,252 + cpxP MCAODC_04340 0.76 +0.6 880,252 + cpxP MCAODC_04340 0.76 +0.0 880,320 - cpxP MCAODC_04340 0.89 -1.3 880,360 + -2.1 880,364 + +2.3 880,364 + +0.5 880,364 + -0.7 880,364 + +0.4 880,364 + -1.2 880,364 + -2.9 880,364 + -0.6 880,364 + +0.7 880,365 - -1.2 880,365 - +0.8 880,365 - +0.3 880,365 - -1.6 880,365 - -0.8 880,365 - -1.3 880,365 - -1.6 880,365 - +0.6 880,365 - -0.8 880,365 - +0.4 880,365 - +0.8 880,365 - -1.3 880,365 - +0.3 880,454 - -0.7 880,463 + +0.4 880,464 - -1.3 880,464 - -0.1 880,512 + -2.6 880,516 + -0.5 880,538 + -0.9 880,538 + -0.6 880,539 - -0.2 880,572 - +1.0 880,661 + cpxR MCAODC_04345 0.20 -2.0 880,676 + cpxR MCAODC_04345 0.22 -0.5 880,676 + cpxR MCAODC_04345 0.22 +0.3 880,676 + cpxR MCAODC_04345 0.22 -2.1 880,677 - cpxR MCAODC_04345 0.22 +0.3 880,699 - cpxR MCAODC_04345 0.25 -2.0 880,709 + cpxR MCAODC_04345 0.27 -0.9 880,709 + cpxR MCAODC_04345 0.27 -2.6 880,710 - cpxR MCAODC_04345 0.27 -0.7 880,710 - cpxR MCAODC_04345 0.27 +0.9 880,746 + cpxR MCAODC_04345 0.32 -0.9 880,746 + cpxR MCAODC_04345 0.32 +0.9 880,746 + cpxR MCAODC_04345 0.32 +0.7 880,747 - cpxR MCAODC_04345 0.32 -0.7 880,810 + cpxR MCAODC_04345 0.41 -0.5 880,810 + cpxR MCAODC_04345 0.41 +1.3 880,852 - cpxR MCAODC_04345 0.47 -1.0 880,852 - cpxR MCAODC_04345 0.47 +1.4 880,937 + cpxR MCAODC_04345 0.59 -0.8 880,938 - cpxR MCAODC_04345 0.60 -2.0 881,017 + cpxR MCAODC_04345 0.71 +1.1 881,017 + cpxR MCAODC_04345 0.71 -0.1 881,018 - cpxR MCAODC_04345 0.71 -0.3 881,018 - cpxR MCAODC_04345 0.71 +0.3 881,221 + +1.3 881,222 - -1.9 881,222 - -3.1 881,230 + -1.3 881,231 - -0.5 881,296 + -2.3 881,410 + cpxA MCAODC_04350 0.14 -3.6 881,411 - cpxA MCAODC_04350 0.14 -1.6 881,445 - cpxA MCAODC_04350 0.17 -1.0 881,534 + cpxA MCAODC_04350 0.23 -1.0 881,540 + cpxA MCAODC_04350 0.24 -1.1 881,540 + cpxA MCAODC_04350 0.24 -2.2 881,634 - cpxA MCAODC_04350 0.30 -1.3 881,634 - cpxA MCAODC_04350 0.30 -0.3 881,634 - cpxA MCAODC_04350 0.30 -0.3 881,634 - cpxA MCAODC_04350 0.30 -0.0 881,637 + cpxA MCAODC_04350 0.31 +0.4 881,688 - cpxA MCAODC_04350 0.34 -1.0 881,692 + cpxA MCAODC_04350 0.35 -1.3 881,692 + cpxA MCAODC_04350 0.35 -0.6 881,693 - cpxA MCAODC_04350 0.35 -1.8 881,711 - cpxA MCAODC_04350 0.36 -0.2 881,713 + cpxA MCAODC_04350 0.36 -1.6 881,714 - cpxA MCAODC_04350 0.36 -1.8 881,789 + cpxA MCAODC_04350 0.42 -1.4 881,789 + cpxA MCAODC_04350 0.42 -2.1 881,789 + cpxA MCAODC_04350 0.42 -2.0 881,790 - cpxA MCAODC_04350 0.42 -2.4 881,951 + cpxA MCAODC_04350 0.53 -1.0 881,996 + cpxA MCAODC_04350 0.57 -0.4 882,104 + cpxA MCAODC_04350 0.65 +0.0 882,105 - cpxA MCAODC_04350 0.65 -3.0 882,105 - cpxA MCAODC_04350 0.65 +0.9 882,219 - cpxA MCAODC_04350 0.73 -3.5 882,219 - cpxA MCAODC_04350 0.73 +0.7
Or see this region's nucleotide sequence