Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnr and nsrR are separated by 38 nucleotides nsrR and purA are separated by 204 nucleotides purA and yjeT are separated by 103 nucleotides yjeT and hflC are separated by 81 nucleotides
MCAODC_02735: rnr - ribonuclease R, at 551,244 to 553,685
rnr
MCAODC_02740: nsrR - nitric oxide-sensing transcriptional repressor NsrR, at 553,724 to 554,149
nsrR
MCAODC_02745: purA - adenylosuccinate synthase, at 554,354 to 555,652
purA
MCAODC_02750: yjeT - Uncharacterized protein YjeT, at 555,756 to 555,953
yjeT
MCAODC_02755: hflC - protease modulator HflC, at 556,035 to 557,039
hflC
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 553.361 kb on - strand, within rnr at 553.361 kb on - strand, within rnr at 553.374 kb on - strand, within rnr at 553.424 kb on + strand, within rnr at 553.424 kb on + strand, within rnr at 553.425 kb on - strand, within rnr at 553.460 kb on - strand at 553.476 kb on - strand at 553.603 kb on - strand at 553.629 kb on - strand at 553.646 kb on - strand at 553.740 kb on - strand at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.789 kb on + strand, within nsrR at 553.790 kb on - strand, within nsrR at 553.822 kb on + strand, within nsrR at 553.823 kb on - strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.924 kb on + strand, within nsrR at 553.924 kb on + strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.946 kb on - strand, within nsrR at 554.015 kb on + strand, within nsrR at 554.016 kb on - strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.032 kb on + strand, within nsrR at 554.032 kb on + strand, within nsrR at 554.033 kb on - strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.117 kb on + strand at 554.117 kb on + strand at 554.118 kb on - strand at 554.118 kb on - strand at 554.141 kb on + strand at 554.142 kb on - strand at 554.180 kb on + strand at 554.181 kb on - strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.189 kb on - strand at 554.189 kb on - strand at 554.189 kb on - strand at 554.260 kb on + strand at 554.261 kb on - strand at 554.261 kb on - strand at 554.280 kb on + strand at 554.280 kb on + strand at 554.281 kb on - strand at 554.306 kb on - strand at 554.317 kb on - strand at 554.333 kb on + strand at 554.334 kb on - strand at 554.355 kb on + strand at 554.356 kb on - strand at 554.937 kb on - strand, within purA at 555.083 kb on - strand, within purA at 555.102 kb on + strand, within purA at 555.325 kb on - strand, within purA at 555.688 kb on - strand at 555.707 kb on + strand at 555.707 kb on + strand at 555.707 kb on + strand at 555.708 kb on - strand at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.781 kb on + strand, within yjeT at 555.782 kb on - strand, within yjeT at 555.784 kb on + strand, within yjeT at 555.833 kb on + strand, within yjeT at 555.959 kb on - strand at 555.964 kb on + strand at 555.966 kb on + strand at 555.967 kb on - strand at 555.967 kb on - strand at 556.009 kb on + strand at 556.010 kb on - strand at 556.031 kb on + strand at 556.031 kb on + strand at 556.033 kb on + strand at 556.034 kb on - strand at 556.034 kb on - strand at 556.034 kb on - strand at 556.066 kb on + strand at 556.067 kb on - strand at 556.370 kb on - strand, within hflC at 556.556 kb on + strand, within hflC
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 553,361 - rnr MCAODC_02735 0.87 +0.2 553,361 - rnr MCAODC_02735 0.87 -0.4 553,374 - rnr MCAODC_02735 0.87 -0.0 553,424 + rnr MCAODC_02735 0.89 +0.1 553,424 + rnr MCAODC_02735 0.89 +0.2 553,425 - rnr MCAODC_02735 0.89 +0.7 553,460 - -0.9 553,476 - -0.5 553,603 - +1.0 553,629 - -0.1 553,646 - -3.2 553,740 - -0.2 553,785 + nsrR MCAODC_02740 0.14 +1.4 553,785 + nsrR MCAODC_02740 0.14 -0.6 553,785 + nsrR MCAODC_02740 0.14 +1.9 553,785 + nsrR MCAODC_02740 0.14 -0.8 553,789 + nsrR MCAODC_02740 0.15 +1.8 553,790 - nsrR MCAODC_02740 0.15 -0.7 553,822 + nsrR MCAODC_02740 0.23 +1.2 553,823 - nsrR MCAODC_02740 0.23 +0.1 553,855 + nsrR MCAODC_02740 0.31 -0.5 553,855 + nsrR MCAODC_02740 0.31 -0.4 553,855 + nsrR MCAODC_02740 0.31 -0.8 553,855 + nsrR MCAODC_02740 0.31 -1.7 553,855 + nsrR MCAODC_02740 0.31 -1.1 553,856 - nsrR MCAODC_02740 0.31 -1.2 553,856 - nsrR MCAODC_02740 0.31 +0.9 553,856 - nsrR MCAODC_02740 0.31 -1.7 553,856 - nsrR MCAODC_02740 0.31 -0.3 553,924 + nsrR MCAODC_02740 0.47 -0.2 553,924 + nsrR MCAODC_02740 0.47 -1.3 553,925 - nsrR MCAODC_02740 0.47 +0.1 553,925 - nsrR MCAODC_02740 0.47 -1.8 553,925 - nsrR MCAODC_02740 0.47 -1.4 553,925 - nsrR MCAODC_02740 0.47 +0.2 553,946 - nsrR MCAODC_02740 0.52 +0.6 554,015 + nsrR MCAODC_02740 0.68 -0.8 554,016 - nsrR MCAODC_02740 0.69 +1.5 554,026 + nsrR MCAODC_02740 0.71 -0.3 554,026 + nsrR MCAODC_02740 0.71 -1.4 554,026 + nsrR MCAODC_02740 0.71 -1.7 554,027 - nsrR MCAODC_02740 0.71 +1.8 554,027 - nsrR MCAODC_02740 0.71 -0.9 554,027 - nsrR MCAODC_02740 0.71 +0.4 554,027 - nsrR MCAODC_02740 0.71 +0.0 554,032 + nsrR MCAODC_02740 0.72 -0.4 554,032 + nsrR MCAODC_02740 0.72 -0.6 554,033 - nsrR MCAODC_02740 0.73 +4.5 554,103 + nsrR MCAODC_02740 0.89 -0.1 554,103 + nsrR MCAODC_02740 0.89 +0.6 554,103 + nsrR MCAODC_02740 0.89 -3.4 554,103 + nsrR MCAODC_02740 0.89 -0.6 554,104 - nsrR MCAODC_02740 0.89 -0.8 554,104 - nsrR MCAODC_02740 0.89 -2.0 554,104 - nsrR MCAODC_02740 0.89 -0.2 554,117 + -0.1 554,117 + +3.5 554,118 - +0.1 554,118 - -1.7 554,141 + +0.1 554,142 - -0.5 554,180 + -1.1 554,181 - +1.2 554,186 + -0.6 554,186 + -0.6 554,186 + -0.8 554,186 + +0.6 554,186 + +0.1 554,186 + -1.0 554,186 + +0.8 554,186 + +1.1 554,187 - -0.8 554,187 - +0.2 554,187 - +0.2 554,187 - -1.5 554,187 - -0.5 554,189 - +0.7 554,189 - +0.9 554,189 - +0.6 554,260 + +1.5 554,261 - +0.8 554,261 - -0.3 554,280 + +1.3 554,280 + +0.2 554,281 - +1.4 554,306 - -0.8 554,317 - +0.4 554,333 + -1.6 554,334 - -0.4 554,355 + -1.9 554,356 - -0.8 554,937 - purA MCAODC_02745 0.45 -0.4 555,083 - purA MCAODC_02745 0.56 -0.4 555,102 + purA MCAODC_02745 0.58 +0.1 555,325 - purA MCAODC_02745 0.75 -0.3 555,688 - -1.0 555,707 + -2.2 555,707 + -0.8 555,707 + -0.3 555,708 - -0.0 555,781 + yjeT MCAODC_02750 0.13 +0.5 555,781 + yjeT MCAODC_02750 0.13 +0.9 555,781 + yjeT MCAODC_02750 0.13 -0.6 555,781 + yjeT MCAODC_02750 0.13 -0.3 555,782 - yjeT MCAODC_02750 0.13 -1.4 555,784 + yjeT MCAODC_02750 0.14 -0.8 555,833 + yjeT MCAODC_02750 0.39 -0.5 555,959 - +0.5 555,964 + +1.3 555,966 + +0.4 555,967 - -1.4 555,967 - -0.4 556,009 + +0.3 556,010 - +0.7 556,031 + +0.3 556,031 + +0.2 556,033 + -0.1 556,034 - +1.5 556,034 - -1.1 556,034 - +0.3 556,066 + -0.2 556,067 - -2.5 556,370 - hflC MCAODC_02755 0.33 +0.3 556,556 + hflC MCAODC_02755 0.52 +0.7
Or see this region's nucleotide sequence