Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqiB and cpdA are separated by 24 nucleotides cpdA and cpdA overlap by 1 nucleotides cpdA and JDDGAC_22465 are separated by 28 nucleotides
JDDGAC_22450: yqiB - DUF1249 domain-containing protein, at 4,294,597 to 4,295,019
yqiB
JDDGAC_22455: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,044 to 4,295,871
cpdA
JDDGAC_22460: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,871 to 4,296,452
cpdA
JDDGAC_22465: JDDGAC_22465 - DNA topoisomerase 4 subunit B, at 4,296,481 to 4,298,373
_22465
Position (kb) 4295
4296
4297 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4294.915 kb on - strand, within yqiB at 4295.017 kb on + strand at 4295.032 kb on + strand at 4295.032 kb on + strand at 4295.032 kb on + strand at 4295.237 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.348 kb on - strand, within cpdA at 4295.518 kb on - strand, within cpdA at 4295.546 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.635 kb on + strand, within cpdA at 4295.635 kb on + strand, within cpdA at 4295.653 kb on - strand, within cpdA at 4295.745 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.755 kb on - strand, within cpdA at 4295.786 kb on + strand, within cpdA at 4295.787 kb on - strand, within cpdA at 4295.891 kb on - strand at 4296.063 kb on - strand, within cpdA at 4296.091 kb on - strand, within cpdA at 4296.136 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.233 kb on + strand, within cpdA at 4296.237 kb on + strand, within cpdA at 4296.345 kb on + strand, within cpdA at 4296.370 kb on + strand, within cpdA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 4,294,915 - yqiB JDDGAC_22450 0.75 -2.3 4,295,017 + +1.6 4,295,032 + +0.6 4,295,032 + -0.6 4,295,032 + +0.6 4,295,237 + cpdA JDDGAC_22455 0.23 -0.9 4,295,347 + cpdA JDDGAC_22455 0.37 -1.6 4,295,347 + cpdA JDDGAC_22455 0.37 -0.2 4,295,347 + cpdA JDDGAC_22455 0.37 -0.6 4,295,347 + cpdA JDDGAC_22455 0.37 +0.6 4,295,348 - cpdA JDDGAC_22455 0.37 -1.4 4,295,518 - cpdA JDDGAC_22455 0.57 -1.0 4,295,546 + cpdA JDDGAC_22455 0.61 -0.9 4,295,559 + cpdA JDDGAC_22455 0.62 -0.5 4,295,559 + cpdA JDDGAC_22455 0.62 -0.2 4,295,559 + cpdA JDDGAC_22455 0.62 -0.2 4,295,635 + cpdA JDDGAC_22455 0.71 +0.4 4,295,635 + cpdA JDDGAC_22455 0.71 -0.7 4,295,653 - cpdA JDDGAC_22455 0.74 -3.2 4,295,745 + cpdA JDDGAC_22455 0.85 -1.4 4,295,754 + cpdA JDDGAC_22455 0.86 -0.2 4,295,754 + cpdA JDDGAC_22455 0.86 -0.7 4,295,754 + cpdA JDDGAC_22455 0.86 -0.4 4,295,755 - cpdA JDDGAC_22455 0.86 -0.7 4,295,786 + cpdA JDDGAC_22455 0.90 -1.3 4,295,787 - cpdA JDDGAC_22455 0.90 +0.7 4,295,891 - +0.3 4,296,063 - cpdA JDDGAC_22460 0.33 +0.0 4,296,091 - cpdA JDDGAC_22460 0.38 -0.4 4,296,136 + cpdA JDDGAC_22460 0.46 -0.2 4,296,213 + cpdA JDDGAC_22460 0.59 -0.4 4,296,213 + cpdA JDDGAC_22460 0.59 -0.7 4,296,213 + cpdA JDDGAC_22460 0.59 -0.8 4,296,213 + cpdA JDDGAC_22460 0.59 -0.6 4,296,213 + cpdA JDDGAC_22460 0.59 -3.6 4,296,214 - cpdA JDDGAC_22460 0.59 -1.0 4,296,214 - cpdA JDDGAC_22460 0.59 -1.5 4,296,214 - cpdA JDDGAC_22460 0.59 -0.8 4,296,233 + cpdA JDDGAC_22460 0.62 +0.9 4,296,237 + cpdA JDDGAC_22460 0.63 +0.6 4,296,345 + cpdA JDDGAC_22460 0.81 +0.0 4,296,370 + cpdA JDDGAC_22460 0.86 -0.1
Or see this region's nucleotide sequence