Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_30010 and yubJ are separated by 46 nucleotides yubJ and JDDGAC_30020 overlap by 4 nucleotides JDDGAC_30020 and JDDGAC_30030 are separated by 995 nucleotides
JDDGAC_30010: JDDGAC_30010 - antirestriction protein, at 26,237 to 26,662
_30010
JDDGAC_30015: yubJ - Uncharacterized protein YubJ, at 26,709 to 27,131
yubJ
JDDGAC_30020: JDDGAC_30020 - hypothetical protein, at 27,128 to 27,319
_30020
JDDGAC_30030: JDDGAC_30030 - YdaB, at 28,315 to 28,545
_30030
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 26.301 kb on - strand, within JDDGAC_30010 at 26.336 kb on + strand, within JDDGAC_30010 at 26.336 kb on + strand, within JDDGAC_30010 at 26.336 kb on + strand, within JDDGAC_30010 at 26.337 kb on - strand, within JDDGAC_30010 at 26.337 kb on - strand, within JDDGAC_30010 at 26.342 kb on + strand, within JDDGAC_30010 at 26.420 kb on + strand, within JDDGAC_30010 at 26.420 kb on + strand, within JDDGAC_30010 at 26.420 kb on + strand, within JDDGAC_30010 at 26.421 kb on - strand, within JDDGAC_30010 at 26.421 kb on - strand, within JDDGAC_30010 at 26.547 kb on - strand, within JDDGAC_30010 at 26.665 kb on - strand at 26.693 kb on + strand at 26.712 kb on + strand at 26.712 kb on + strand at 26.713 kb on - strand at 26.713 kb on - strand at 26.713 kb on - strand at 26.713 kb on - strand at 26.713 kb on - strand at 26.717 kb on + strand at 26.717 kb on + strand at 26.815 kb on + strand, within yubJ at 26.816 kb on - strand, within yubJ at 26.816 kb on - strand, within yubJ at 26.886 kb on + strand, within yubJ at 27.024 kb on + strand, within yubJ at 27.133 kb on + strand at 27.133 kb on + strand at 27.168 kb on - strand, within JDDGAC_30020 at 27.290 kb on + strand, within JDDGAC_30020 at 27.291 kb on - strand, within JDDGAC_30020 at 27.291 kb on - strand, within JDDGAC_30020 at 27.297 kb on + strand, within JDDGAC_30020 at 27.321 kb on - strand at 27.467 kb on - strand at 27.492 kb on + strand at 27.493 kb on - strand at 27.824 kb on - strand at 28.025 kb on - strand at 28.025 kb on - strand at 28.104 kb on - strand at 28.130 kb on - strand at 28.130 kb on - strand at 28.130 kb on - strand at 28.161 kb on - strand at 28.215 kb on - strand at 28.243 kb on - strand at 28.243 kb on - strand at 28.255 kb on - strand at 28.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 26,301 - JDDGAC_30010 0.15 -0.2 26,336 + JDDGAC_30010 0.23 +1.1 26,336 + JDDGAC_30010 0.23 +0.4 26,336 + JDDGAC_30010 0.23 -1.0 26,337 - JDDGAC_30010 0.23 -0.1 26,337 - JDDGAC_30010 0.23 -0.2 26,342 + JDDGAC_30010 0.25 -0.6 26,420 + JDDGAC_30010 0.43 +0.1 26,420 + JDDGAC_30010 0.43 +0.3 26,420 + JDDGAC_30010 0.43 -0.4 26,421 - JDDGAC_30010 0.43 +0.5 26,421 - JDDGAC_30010 0.43 -0.9 26,547 - JDDGAC_30010 0.73 -0.1 26,665 - +0.5 26,693 + +0.8 26,712 + -0.4 26,712 + +0.2 26,713 - -0.2 26,713 - -1.3 26,713 - -0.3 26,713 - +1.0 26,713 - -1.2 26,717 + -1.6 26,717 + +1.1 26,815 + yubJ JDDGAC_30015 0.25 +0.2 26,816 - yubJ JDDGAC_30015 0.25 -1.3 26,816 - yubJ JDDGAC_30015 0.25 +0.9 26,886 + yubJ JDDGAC_30015 0.42 -1.1 27,024 + yubJ JDDGAC_30015 0.74 +1.0 27,133 + -0.3 27,133 + +0.9 27,168 - JDDGAC_30020 0.21 +0.2 27,290 + JDDGAC_30020 0.84 -2.7 27,291 - JDDGAC_30020 0.85 -0.8 27,291 - JDDGAC_30020 0.85 -2.0 27,297 + JDDGAC_30020 0.88 -0.7 27,321 - -2.1 27,467 - +0.6 27,492 + -0.2 27,493 - -0.3 27,824 - -0.7 28,025 - +0.2 28,025 - +0.5 28,104 - -1.4 28,130 - -1.7 28,130 - -0.0 28,130 - +1.1 28,161 - -0.6 28,215 - -1.5 28,243 - -0.9 28,243 - -0.6 28,255 - -0.0 28,315 - -0.0
Or see this region's nucleotide sequence