Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29885

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteptO and tnp-IS911 are separated by 178 nucleotidestnp-IS911 and tnp-IS3 are separated by 212 nucleotides JDDGAC_29880: eptO - GspS family T2SS pilot lipoprotein variant EptO, at 45 to 443 eptO JDDGAC_29885: tnp-IS911 - IS3 family IS911 transposase, at 622 to 927 tnp-IS911 JDDGAC_29890: tnp-IS3 - IS3 family transposase, at 1,140 to 1,793 tnp-IS3 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.033 kb on + strandat 0.034 kb on - strandat 0.037 kb on - strandat 0.054 kb on - strandat 0.085 kb on + strand, within eptOat 0.088 kb on + strand, within eptOat 0.094 kb on + strand, within eptOat 0.095 kb on - strand, within eptOat 0.101 kb on + strand, within eptOat 0.218 kb on + strand, within eptOat 0.219 kb on - strand, within eptOat 0.219 kb on - strand, within eptOat 0.225 kb on - strand, within eptOat 0.254 kb on - strand, within eptOat 0.313 kb on + strand, within eptOat 0.313 kb on + strand, within eptOat 0.313 kb on + strand, within eptOat 0.313 kb on + strand, within eptOat 0.313 kb on + strand, within eptOat 0.314 kb on - strand, within eptOat 0.314 kb on - strand, within eptOat 0.314 kb on - strand, within eptOat 0.314 kb on - strand, within eptOat 0.332 kb on + strand, within eptOat 0.332 kb on + strand, within eptOat 0.332 kb on + strand, within eptOat 0.332 kb on + strand, within eptOat 0.333 kb on - strand, within eptOat 0.333 kb on - strand, within eptOat 0.336 kb on + strand, within eptOat 0.336 kb on + strand, within eptOat 0.336 kb on + strand, within eptOat 0.336 kb on + strand, within eptOat 0.337 kb on - strand, within eptOat 0.337 kb on - strand, within eptOat 0.337 kb on - strand, within eptOat 0.337 kb on - strand, within eptOat 0.337 kb on - strand, within eptOat 0.337 kb on - strand, within eptOat 0.369 kb on + strand, within eptOat 0.369 kb on + strand, within eptOat 0.371 kb on + strand, within eptOat 0.373 kb on + strand, within eptOat 0.373 kb on + strand, within eptOat 0.373 kb on + strand, within eptOat 0.373 kb on + strand, within eptOat 0.374 kb on - strand, within eptOat 0.374 kb on - strand, within eptOat 0.374 kb on - strand, within eptOat 0.445 kb on - strandat 0.445 kb on - strandat 0.472 kb on + strandat 0.492 kb on + strandat 0.526 kb on - strandat 0.526 kb on - strandat 0.552 kb on + strandat 0.553 kb on - strandat 0.590 kb on + strandat 0.591 kb on - strandat 0.652 kb on - strandat 0.688 kb on + strand, within tnp-IS911at 0.689 kb on - strand, within tnp-IS911at 0.714 kb on + strand, within tnp-IS911at 0.996 kb on + strandat 0.996 kb on + strandat 0.996 kb on + strandat 0.996 kb on + strandat 1.002 kb on + strandat 1.002 kb on + strandat 1.045 kb on + strandat 1.049 kb on - strandat 1.049 kb on - strandat 1.311 kb on + strand, within tnp-IS3at 1.312 kb on - strand, within tnp-IS3at 1.338 kb on + strand, within tnp-IS3at 1.338 kb on + strand, within tnp-IS3at 1.339 kb on - strand, within tnp-IS3at 1.498 kb on - strand, within tnp-IS3at 1.498 kb on - strand, within tnp-IS3at 1.499 kb on + strand, within tnp-IS3at 1.500 kb on - strand, within tnp-IS3at 1.500 kb on - strand, within tnp-IS3at 1.522 kb on + strand, within tnp-IS3at 1.523 kb on - strand, within tnp-IS3at 1.669 kb on + strand, within tnp-IS3at 1.669 kb on + strand, within tnp-IS3at 1.677 kb on + strand, within tnp-IS3at 1.677 kb on + strand, within tnp-IS3at 1.689 kb on + strand, within tnp-IS3at 1.690 kb on - strand, within tnp-IS3at 1.717 kb on - strand, within tnp-IS3at 1.798 kb on + strandat 1.826 kb on + strandat 1.895 kb on + strandat 1.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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33 + -0.7
34 - +0.0
37 - +0.5
54 - +0.5
85 + eptO JDDGAC_29880 0.10 -1.9
88 + eptO JDDGAC_29880 0.11 -0.4
94 + eptO JDDGAC_29880 0.12 +0.6
95 - eptO JDDGAC_29880 0.13 +1.5
101 + eptO JDDGAC_29880 0.14 -0.3
218 + eptO JDDGAC_29880 0.43 +1.4
219 - eptO JDDGAC_29880 0.44 +0.2
219 - eptO JDDGAC_29880 0.44 +1.3
225 - eptO JDDGAC_29880 0.45 +0.9
254 - eptO JDDGAC_29880 0.52 -0.4
313 + eptO JDDGAC_29880 0.67 +0.2
313 + eptO JDDGAC_29880 0.67 -0.3
313 + eptO JDDGAC_29880 0.67 -1.1
313 + eptO JDDGAC_29880 0.67 -0.5
313 + eptO JDDGAC_29880 0.67 -0.6
314 - eptO JDDGAC_29880 0.67 +0.1
314 - eptO JDDGAC_29880 0.67 -0.2
314 - eptO JDDGAC_29880 0.67 -0.2
314 - eptO JDDGAC_29880 0.67 -0.8
332 + eptO JDDGAC_29880 0.72 +1.2
332 + eptO JDDGAC_29880 0.72 +0.1
332 + eptO JDDGAC_29880 0.72 -1.0
332 + eptO JDDGAC_29880 0.72 -0.6
333 - eptO JDDGAC_29880 0.72 -1.2
333 - eptO JDDGAC_29880 0.72 -2.0
336 + eptO JDDGAC_29880 0.73 +0.9
336 + eptO JDDGAC_29880 0.73 -1.1
336 + eptO JDDGAC_29880 0.73 -0.7
336 + eptO JDDGAC_29880 0.73 -0.5
337 - eptO JDDGAC_29880 0.73 -0.6
337 - eptO JDDGAC_29880 0.73 -0.4
337 - eptO JDDGAC_29880 0.73 -0.4
337 - eptO JDDGAC_29880 0.73 -0.8
337 - eptO JDDGAC_29880 0.73 -0.4
337 - eptO JDDGAC_29880 0.73 -0.9
369 + eptO JDDGAC_29880 0.81 -1.1
369 + eptO JDDGAC_29880 0.81 +1.3
371 + eptO JDDGAC_29880 0.82 +0.8
373 + eptO JDDGAC_29880 0.82 -0.3
373 + eptO JDDGAC_29880 0.82 +0.4
373 + eptO JDDGAC_29880 0.82 -0.7
373 + eptO JDDGAC_29880 0.82 -0.1
374 - eptO JDDGAC_29880 0.82 +1.1
374 - eptO JDDGAC_29880 0.82 -0.3
374 - eptO JDDGAC_29880 0.82 +0.1
445 - +0.8
445 - -1.5
472 + +0.4
492 + +1.2
526 - -0.1
526 - -0.3
552 + +0.1
553 - -1.9
590 + +0.0
591 - +1.1
652 - +1.7
688 + tnp-IS911 JDDGAC_29885 0.22 -0.5
689 - tnp-IS911 JDDGAC_29885 0.22 -1.0
714 + tnp-IS911 JDDGAC_29885 0.30 -1.3
996 + -1.1
996 + +0.0
996 + -0.7
996 + +0.3
1,002 + -0.4
1,002 + +0.5
1,045 + +0.3
1,049 - +0.5
1,049 - -0.3
1,311 + tnp-IS3 JDDGAC_29890 0.26 -0.2
1,312 - tnp-IS3 JDDGAC_29890 0.26 -0.6
1,338 + tnp-IS3 JDDGAC_29890 0.30 -1.9
1,338 + tnp-IS3 JDDGAC_29890 0.30 +0.5
1,339 - tnp-IS3 JDDGAC_29890 0.30 +0.0
1,498 - tnp-IS3 JDDGAC_29890 0.55 +0.6
1,498 - tnp-IS3 JDDGAC_29890 0.55 -0.3
1,499 + tnp-IS3 JDDGAC_29890 0.55 +0.2
1,500 - tnp-IS3 JDDGAC_29890 0.55 -0.1
1,500 - tnp-IS3 JDDGAC_29890 0.55 -0.2
1,522 + tnp-IS3 JDDGAC_29890 0.58 +0.2
1,523 - tnp-IS3 JDDGAC_29890 0.59 +0.4
1,669 + tnp-IS3 JDDGAC_29890 0.81 -0.5
1,669 + tnp-IS3 JDDGAC_29890 0.81 -1.0
1,677 + tnp-IS3 JDDGAC_29890 0.82 +0.1
1,677 + tnp-IS3 JDDGAC_29890 0.82 +1.3
1,689 + tnp-IS3 JDDGAC_29890 0.84 -2.1
1,690 - tnp-IS3 JDDGAC_29890 0.84 -2.0
1,717 - tnp-IS3 JDDGAC_29890 0.88 +1.0
1,798 + -0.3
1,826 + +0.6
1,895 + +0.6
1,923 - -0.5

Or see this region's nucleotide sequence