Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegS and JDDGAC_28265 are separated by 405 nucleotides JDDGAC_28265 and yegQ are separated by 329 nucleotides
JDDGAC_28260: yegS - lipid kinase YegS, at 5,414,821 to 5,415,720
yegS
JDDGAC_28265: JDDGAC_28265 - Uncharacterized protein YegR, at 5,416,126 to 5,416,443
_28265
JDDGAC_28275: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 5,416,773 to 5,418,134
yegQ
Position (kb) 5416
5417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5415.201 kb on + strand, within yegS at 5415.230 kb on + strand, within yegS at 5415.230 kb on + strand, within yegS at 5415.231 kb on - strand, within yegS at 5415.313 kb on - strand, within yegS at 5415.315 kb on + strand, within yegS at 5415.316 kb on - strand, within yegS at 5415.346 kb on - strand, within yegS at 5415.350 kb on - strand, within yegS at 5415.390 kb on + strand, within yegS at 5415.511 kb on - strand, within yegS at 5415.645 kb on + strand at 5415.645 kb on + strand at 5415.726 kb on + strand at 5415.750 kb on - strand at 5415.750 kb on - strand at 5415.915 kb on - strand at 5415.918 kb on + strand at 5415.948 kb on + strand at 5416.089 kb on + strand at 5416.261 kb on + strand, within JDDGAC_28265 at 5416.301 kb on + strand, within JDDGAC_28265 at 5416.403 kb on + strand, within JDDGAC_28265 at 5416.538 kb on + strand at 5416.539 kb on - strand at 5416.553 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.595 kb on + strand at 5416.629 kb on - strand at 5416.661 kb on + strand at 5416.872 kb on - strand at 5416.899 kb on - strand at 5416.899 kb on - strand at 5416.935 kb on - strand, within yegQ at 5417.108 kb on + strand, within yegQ at 5417.135 kb on - strand, within yegQ at 5417.245 kb on + strand, within yegQ at 5417.311 kb on - strand, within yegQ at 5417.350 kb on + strand, within yegQ at 5417.350 kb on + strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.351 kb on - strand, within yegQ at 5417.382 kb on - strand, within yegQ at 5417.383 kb on + strand, within yegQ at 5417.384 kb on - strand, within yegQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 5,415,201 + yegS JDDGAC_28260 0.42 -1.8 5,415,230 + yegS JDDGAC_28260 0.45 -2.0 5,415,230 + yegS JDDGAC_28260 0.45 -1.4 5,415,231 - yegS JDDGAC_28260 0.46 -0.5 5,415,313 - yegS JDDGAC_28260 0.55 -0.4 5,415,315 + yegS JDDGAC_28260 0.55 +0.2 5,415,316 - yegS JDDGAC_28260 0.55 -2.1 5,415,346 - yegS JDDGAC_28260 0.58 -0.0 5,415,350 - yegS JDDGAC_28260 0.59 +0.3 5,415,390 + yegS JDDGAC_28260 0.63 -1.4 5,415,511 - yegS JDDGAC_28260 0.77 -0.5 5,415,645 + -0.1 5,415,645 + -0.1 5,415,726 + +1.3 5,415,750 - +2.2 5,415,750 - -1.1 5,415,915 - +0.2 5,415,918 + +2.7 5,415,948 + -0.1 5,416,089 + -1.8 5,416,261 + JDDGAC_28265 0.42 -0.6 5,416,301 + JDDGAC_28265 0.55 -1.4 5,416,403 + JDDGAC_28265 0.87 -0.1 5,416,538 + +0.6 5,416,539 - -0.3 5,416,553 + -0.4 5,416,595 + -2.2 5,416,595 + -2.1 5,416,595 + -2.8 5,416,629 - +0.0 5,416,661 + +0.0 5,416,872 - +0.6 5,416,899 - -0.3 5,416,899 - +0.1 5,416,935 - yegQ JDDGAC_28275 0.12 +0.0 5,417,108 + yegQ JDDGAC_28275 0.25 -0.4 5,417,135 - yegQ JDDGAC_28275 0.27 +0.4 5,417,245 + yegQ JDDGAC_28275 0.35 +0.3 5,417,311 - yegQ JDDGAC_28275 0.40 +0.5 5,417,350 + yegQ JDDGAC_28275 0.42 +0.5 5,417,350 + yegQ JDDGAC_28275 0.42 -0.2 5,417,351 - yegQ JDDGAC_28275 0.42 +0.4 5,417,351 - yegQ JDDGAC_28275 0.42 -0.1 5,417,351 - yegQ JDDGAC_28275 0.42 -0.8 5,417,351 - yegQ JDDGAC_28275 0.42 +1.9 5,417,351 - yegQ JDDGAC_28275 0.42 -0.2 5,417,351 - yegQ JDDGAC_28275 0.42 +0.3 5,417,382 - yegQ JDDGAC_28275 0.45 +0.4 5,417,383 + yegQ JDDGAC_28275 0.45 +0.2 5,417,384 - yegQ JDDGAC_28275 0.45 +0.7
Or see this region's nucleotide sequence