Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiQ and yeiP are separated by 213 nucleotides yeiP and yeiW are separated by 154 nucleotides yeiW and setB overlap by 4 nucleotides
JDDGAC_27375: yeiQ - Uncharacterized oxidoreductase YeiQ, at 5,258,318 to 5,259,793
yeiQ
JDDGAC_27380: yeiP - elongation factor P-like protein YeiP, at 5,260,007 to 5,260,579
yeiP
JDDGAC_27385: yeiW - UPF0153 protein YeiW, at 5,260,734 to 5,260,988
yeiW
JDDGAC_27390: setB - sugar efflux transporter SetB, at 5,260,985 to 5,262,166
setB
Position (kb) 5260
5261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5259.746 kb on + strand at 5259.747 kb on - strand at 5259.747 kb on - strand at 5259.785 kb on - strand at 5259.798 kb on + strand at 5259.832 kb on + strand at 5259.916 kb on + strand at 5259.955 kb on + strand at 5260.070 kb on + strand, within yeiP at 5260.071 kb on - strand, within yeiP at 5260.071 kb on - strand, within yeiP at 5260.300 kb on + strand, within yeiP at 5260.302 kb on + strand, within yeiP at 5260.311 kb on + strand, within yeiP at 5260.312 kb on - strand, within yeiP at 5260.328 kb on - strand, within yeiP at 5260.336 kb on - strand, within yeiP at 5260.353 kb on + strand, within yeiP at 5260.354 kb on - strand, within yeiP at 5260.354 kb on - strand, within yeiP at 5260.550 kb on - strand at 5260.593 kb on + strand at 5260.721 kb on - strand at 5260.721 kb on - strand at 5260.733 kb on + strand at 5260.903 kb on + strand, within yeiW at 5260.904 kb on - strand, within yeiW at 5260.904 kb on - strand, within yeiW at 5260.996 kb on + strand at 5261.182 kb on - strand, within setB at 5261.213 kb on - strand, within setB at 5261.219 kb on - strand, within setB at 5261.316 kb on - strand, within setB at 5261.326 kb on + strand, within setB at 5261.441 kb on - strand, within setB at 5261.445 kb on - strand, within setB at 5261.463 kb on + strand, within setB at 5261.464 kb on - strand, within setB at 5261.464 kb on - strand, within setB at 5261.492 kb on - strand, within setB at 5261.516 kb on - strand, within setB at 5261.585 kb on + strand, within setB at 5261.617 kb on + strand, within setB at 5261.618 kb on - strand, within setB at 5261.641 kb on - strand, within setB at 5261.646 kb on - strand, within setB at 5261.651 kb on - strand, within setB at 5261.676 kb on + strand, within setB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 5,259,746 + +0.6 5,259,747 - +0.4 5,259,747 - -0.8 5,259,785 - +0.3 5,259,798 + +1.0 5,259,832 + -0.4 5,259,916 + -1.3 5,259,955 + -0.5 5,260,070 + yeiP JDDGAC_27380 0.11 -0.4 5,260,071 - yeiP JDDGAC_27380 0.11 +3.0 5,260,071 - yeiP JDDGAC_27380 0.11 +0.5 5,260,300 + yeiP JDDGAC_27380 0.51 -0.9 5,260,302 + yeiP JDDGAC_27380 0.51 +0.7 5,260,311 + yeiP JDDGAC_27380 0.53 +1.3 5,260,312 - yeiP JDDGAC_27380 0.53 -0.5 5,260,328 - yeiP JDDGAC_27380 0.56 -1.4 5,260,336 - yeiP JDDGAC_27380 0.57 -1.4 5,260,353 + yeiP JDDGAC_27380 0.60 -0.1 5,260,354 - yeiP JDDGAC_27380 0.61 +1.0 5,260,354 - yeiP JDDGAC_27380 0.61 -0.7 5,260,550 - +0.2 5,260,593 + -0.3 5,260,721 - +0.3 5,260,721 - +0.8 5,260,733 + -1.0 5,260,903 + yeiW JDDGAC_27385 0.66 -0.6 5,260,904 - yeiW JDDGAC_27385 0.67 -1.2 5,260,904 - yeiW JDDGAC_27385 0.67 -2.0 5,260,996 + +1.3 5,261,182 - setB JDDGAC_27390 0.17 -1.2 5,261,213 - setB JDDGAC_27390 0.19 +0.7 5,261,219 - setB JDDGAC_27390 0.20 +0.5 5,261,316 - setB JDDGAC_27390 0.28 +0.6 5,261,326 + setB JDDGAC_27390 0.29 +0.6 5,261,441 - setB JDDGAC_27390 0.39 -1.3 5,261,445 - setB JDDGAC_27390 0.39 -0.5 5,261,463 + setB JDDGAC_27390 0.40 -0.5 5,261,464 - setB JDDGAC_27390 0.41 +0.6 5,261,464 - setB JDDGAC_27390 0.41 +1.4 5,261,492 - setB JDDGAC_27390 0.43 +0.2 5,261,516 - setB JDDGAC_27390 0.45 -0.1 5,261,585 + setB JDDGAC_27390 0.51 -1.2 5,261,617 + setB JDDGAC_27390 0.53 +0.2 5,261,618 - setB JDDGAC_27390 0.54 -0.3 5,261,641 - setB JDDGAC_27390 0.55 +0.3 5,261,646 - setB JDDGAC_27390 0.56 -0.5 5,261,651 - setB JDDGAC_27390 0.56 -0.3 5,261,676 + setB JDDGAC_27390 0.58 -1.0
Or see this region's nucleotide sequence