Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoC and nuoE are separated by 2 nucleotides nuoE and nuoF overlap by 4 nucleotides
JDDGAC_26815: nuoC - NADH-quinone oxidoreductase subunit C/D, at 5,132,243 to 5,134,045
nuoC
JDDGAC_26820: nuoE - NADH-quinone oxidoreductase subunit NuoE, at 5,134,048 to 5,134,548
nuoE
JDDGAC_26825: nuoF - NADH-quinone oxidoreductase subunit NuoF, at 5,134,545 to 5,135,882
nuoF
Position (kb) 5134
5135 Strain fitness (log2 ratio) -1
0
1
2 at 5133.102 kb on - strand, within nuoC at 5133.206 kb on + strand, within nuoC at 5133.206 kb on + strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.207 kb on - strand, within nuoC at 5133.208 kb on + strand, within nuoC at 5133.208 kb on + strand, within nuoC at 5133.208 kb on + strand, within nuoC at 5133.221 kb on - strand, within nuoC at 5133.314 kb on - strand, within nuoC at 5133.582 kb on - strand, within nuoC at 5133.632 kb on + strand, within nuoC at 5133.632 kb on + strand, within nuoC at 5133.632 kb on + strand, within nuoC at 5133.632 kb on + strand, within nuoC at 5133.642 kb on + strand, within nuoC at 5133.649 kb on + strand, within nuoC at 5133.879 kb on - strand at 5133.881 kb on + strand at 5133.882 kb on - strand at 5134.002 kb on - strand at 5134.002 kb on - strand at 5134.002 kb on - strand at 5134.024 kb on + strand at 5134.047 kb on + strand at 5134.341 kb on + strand, within nuoE at 5134.342 kb on - strand, within nuoE at 5134.425 kb on + strand, within nuoE at 5134.426 kb on - strand, within nuoE at 5134.629 kb on + strand at 5134.839 kb on + strand, within nuoF at 5134.840 kb on - strand, within nuoF at 5134.840 kb on - strand, within nuoF at 5134.890 kb on - strand, within nuoF at 5134.929 kb on + strand, within nuoF at 5134.953 kb on - strand, within nuoF at 5134.953 kb on - strand, within nuoF at 5135.102 kb on - strand, within nuoF at 5135.271 kb on - strand, within nuoF at 5135.373 kb on + strand, within nuoF at 5135.384 kb on + strand, within nuoF at 5135.484 kb on - strand, within nuoF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 5,133,102 - nuoC JDDGAC_26815 0.48 +0.3 5,133,206 + nuoC JDDGAC_26815 0.53 -0.6 5,133,206 + nuoC JDDGAC_26815 0.53 +0.1 5,133,207 - nuoC JDDGAC_26815 0.53 -0.3 5,133,207 - nuoC JDDGAC_26815 0.53 -1.1 5,133,207 - nuoC JDDGAC_26815 0.53 +1.2 5,133,207 - nuoC JDDGAC_26815 0.53 +0.1 5,133,207 - nuoC JDDGAC_26815 0.53 +0.4 5,133,207 - nuoC JDDGAC_26815 0.53 -1.1 5,133,207 - nuoC JDDGAC_26815 0.53 -0.2 5,133,208 + nuoC JDDGAC_26815 0.54 +1.1 5,133,208 + nuoC JDDGAC_26815 0.54 -1.6 5,133,208 + nuoC JDDGAC_26815 0.54 +0.6 5,133,221 - nuoC JDDGAC_26815 0.54 -1.6 5,133,314 - nuoC JDDGAC_26815 0.59 -1.5 5,133,582 - nuoC JDDGAC_26815 0.74 +0.9 5,133,632 + nuoC JDDGAC_26815 0.77 +1.8 5,133,632 + nuoC JDDGAC_26815 0.77 -0.2 5,133,632 + nuoC JDDGAC_26815 0.77 -1.3 5,133,632 + nuoC JDDGAC_26815 0.77 -0.2 5,133,642 + nuoC JDDGAC_26815 0.78 +0.2 5,133,649 + nuoC JDDGAC_26815 0.78 -1.2 5,133,879 - -0.7 5,133,881 + +1.1 5,133,882 - +0.5 5,134,002 - -1.0 5,134,002 - +0.2 5,134,002 - +0.9 5,134,024 + -0.3 5,134,047 + -0.6 5,134,341 + nuoE JDDGAC_26820 0.58 +1.0 5,134,342 - nuoE JDDGAC_26820 0.59 -0.9 5,134,425 + nuoE JDDGAC_26820 0.75 -1.4 5,134,426 - nuoE JDDGAC_26820 0.75 -1.4 5,134,629 + -0.5 5,134,839 + nuoF JDDGAC_26825 0.22 +0.7 5,134,840 - nuoF JDDGAC_26825 0.22 +0.1 5,134,840 - nuoF JDDGAC_26825 0.22 +0.4 5,134,890 - nuoF JDDGAC_26825 0.26 -0.9 5,134,929 + nuoF JDDGAC_26825 0.29 -0.2 5,134,953 - nuoF JDDGAC_26825 0.30 -1.6 5,134,953 - nuoF JDDGAC_26825 0.30 -0.4 5,135,102 - nuoF JDDGAC_26825 0.42 +0.6 5,135,271 - nuoF JDDGAC_26825 0.54 -1.0 5,135,373 + nuoF JDDGAC_26825 0.62 +2.4 5,135,384 + nuoF JDDGAC_26825 0.63 +2.1 5,135,484 - nuoF JDDGAC_26825 0.70 -0.8
Or see this region's nucleotide sequence