Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisM and hisP are separated by 7 nucleotides hisP and JDDGAC_26710 are separated by 196 nucleotides JDDGAC_26710 and rpnB are separated by 105 nucleotides rpnB and yfcH are separated by 47 nucleotides
JDDGAC_26700: hisM - Histidine transport system permease protein HisM, at 5,110,867 to 5,111,583
hisM
JDDGAC_26705: hisP - histidine ABC transporter ATP-binding protein HisP, at 5,111,591 to 5,112,364
hisP
JDDGAC_26710: JDDGAC_26710 - Transposase, at 5,112,561 to 5,113,184
_26710
JDDGAC_26715: rpnB - Recombination-promoting nuclease RpnB, at 5,113,290 to 5,113,451
rpnB
JDDGAC_26720: yfcH - Epimerase family protein YfcH, at 5,113,499 to 5,114,392
yfcH
Position (kb) 5112
5113
5114 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5111.587 kb on + strand at 5111.588 kb on - strand at 5111.607 kb on + strand at 5111.688 kb on + strand, within hisP at 5111.688 kb on + strand, within hisP at 5111.688 kb on + strand, within hisP at 5111.688 kb on + strand, within hisP at 5111.689 kb on - strand, within hisP at 5111.692 kb on - strand, within hisP at 5111.744 kb on - strand, within hisP at 5111.857 kb on - strand, within hisP at 5111.993 kb on + strand, within hisP at 5112.243 kb on + strand, within hisP at 5112.243 kb on + strand, within hisP at 5112.244 kb on - strand, within hisP at 5112.244 kb on - strand, within hisP at 5112.244 kb on - strand, within hisP at 5112.279 kb on + strand, within hisP at 5112.279 kb on + strand, within hisP at 5112.436 kb on + strand at 5112.459 kb on + strand at 5112.599 kb on - strand at 5112.602 kb on + strand at 5112.696 kb on - strand, within JDDGAC_26710 at 5112.786 kb on + strand, within JDDGAC_26710 at 5112.796 kb on + strand, within JDDGAC_26710 at 5112.892 kb on - strand, within JDDGAC_26710 at 5113.008 kb on + strand, within JDDGAC_26710 at 5113.035 kb on - strand, within JDDGAC_26710 at 5113.062 kb on - strand, within JDDGAC_26710 at 5113.182 kb on + strand at 5113.183 kb on - strand at 5113.186 kb on + strand at 5113.200 kb on - strand at 5113.203 kb on + strand at 5113.204 kb on - strand at 5113.207 kb on + strand at 5113.207 kb on + strand at 5113.255 kb on + strand at 5113.355 kb on + strand, within rpnB at 5113.449 kb on + strand at 5113.458 kb on - strand at 5113.470 kb on + strand at 5113.471 kb on - strand at 5113.595 kb on + strand, within yfcH at 5113.595 kb on + strand, within yfcH at 5113.596 kb on - strand, within yfcH at 5113.596 kb on - strand, within yfcH at 5113.599 kb on - strand, within yfcH at 5113.733 kb on - strand, within yfcH at 5113.784 kb on - strand, within yfcH at 5113.978 kb on + strand, within yfcH at 5114.030 kb on + strand, within yfcH at 5114.030 kb on + strand, within yfcH at 5114.031 kb on - strand, within yfcH at 5114.031 kb on - strand, within yfcH at 5114.174 kb on - strand, within yfcH
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 5,111,587 + +1.5 5,111,588 - -1.0 5,111,607 + -0.2 5,111,688 + hisP JDDGAC_26705 0.13 -0.9 5,111,688 + hisP JDDGAC_26705 0.13 -0.4 5,111,688 + hisP JDDGAC_26705 0.13 +1.3 5,111,688 + hisP JDDGAC_26705 0.13 +0.8 5,111,689 - hisP JDDGAC_26705 0.13 -1.4 5,111,692 - hisP JDDGAC_26705 0.13 +0.8 5,111,744 - hisP JDDGAC_26705 0.20 -0.2 5,111,857 - hisP JDDGAC_26705 0.34 +1.1 5,111,993 + hisP JDDGAC_26705 0.52 +1.5 5,112,243 + hisP JDDGAC_26705 0.84 +0.8 5,112,243 + hisP JDDGAC_26705 0.84 +0.2 5,112,244 - hisP JDDGAC_26705 0.84 -1.5 5,112,244 - hisP JDDGAC_26705 0.84 +0.6 5,112,244 - hisP JDDGAC_26705 0.84 -1.4 5,112,279 + hisP JDDGAC_26705 0.89 -1.9 5,112,279 + hisP JDDGAC_26705 0.89 +0.3 5,112,436 + +0.5 5,112,459 + -1.1 5,112,599 - -0.9 5,112,602 + +0.8 5,112,696 - JDDGAC_26710 0.22 -0.3 5,112,786 + JDDGAC_26710 0.36 -1.5 5,112,796 + JDDGAC_26710 0.38 -0.9 5,112,892 - JDDGAC_26710 0.53 -0.7 5,113,008 + JDDGAC_26710 0.72 -1.4 5,113,035 - JDDGAC_26710 0.76 -0.3 5,113,062 - JDDGAC_26710 0.80 -0.7 5,113,182 + -1.0 5,113,183 - -0.4 5,113,186 + -1.0 5,113,200 - +1.9 5,113,203 + -0.4 5,113,204 - -0.6 5,113,207 + -0.2 5,113,207 + +1.0 5,113,255 + -0.5 5,113,355 + rpnB JDDGAC_26715 0.40 +1.4 5,113,449 + -0.9 5,113,458 - -0.2 5,113,470 + +2.3 5,113,471 - +0.6 5,113,595 + yfcH JDDGAC_26720 0.11 +0.1 5,113,595 + yfcH JDDGAC_26720 0.11 -0.7 5,113,596 - yfcH JDDGAC_26720 0.11 -0.6 5,113,596 - yfcH JDDGAC_26720 0.11 +1.4 5,113,599 - yfcH JDDGAC_26720 0.11 -2.1 5,113,733 - yfcH JDDGAC_26720 0.26 +0.1 5,113,784 - yfcH JDDGAC_26720 0.32 -0.5 5,113,978 + yfcH JDDGAC_26720 0.54 -0.4 5,114,030 + yfcH JDDGAC_26720 0.59 -0.5 5,114,030 + yfcH JDDGAC_26720 0.59 -0.1 5,114,031 - yfcH JDDGAC_26720 0.60 +0.2 5,114,031 - yfcH JDDGAC_26720 0.60 -0.3 5,114,174 - yfcH JDDGAC_26720 0.76 -0.6
Or see this region's nucleotide sequence