Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_23540 and JDDGAC_23545 are separated by 429 nucleotides JDDGAC_23545 and yqeL overlap by 25 nucleotides yqeL and yqeJ are separated by 32 nucleotides yqeJ and yqeI overlap by 4 nucleotides
JDDGAC_23540: JDDGAC_23540 - Putative uncharacterized protein YgeF, at 4,506,757 to 4,507,248
_23540
JDDGAC_23545: JDDGAC_23545 - Uncharacterized protein YqeK, at 4,507,678 to 4,508,103
_23545
JDDGAC_23550: yqeL - Uncharacterized protein YqeL, at 4,508,079 to 4,508,219
yqeL
JDDGAC_23555: yqeJ - Uncharacterized protein YqeJ, at 4,508,252 to 4,508,731
yqeJ
JDDGAC_23560: yqeI - Uncharacterized protein YqeI, at 4,508,728 to 4,509,537
yqeI
Position (kb) 4507
4508
4509 Strain fitness (log2 ratio) -1
0
1 at 4506.903 kb on + strand, within JDDGAC_23540 at 4506.904 kb on - strand, within JDDGAC_23540 at 4507.002 kb on + strand, within JDDGAC_23540 at 4507.406 kb on - strand at 4507.474 kb on + strand at 4507.520 kb on - strand at 4507.674 kb on + strand at 4507.890 kb on + strand, within JDDGAC_23545 at 4508.105 kb on - strand, within yqeL at 4508.105 kb on - strand, within yqeL at 4509.068 kb on - strand, within yqeI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 4,506,903 + JDDGAC_23540 0.30 -0.8 4,506,904 - JDDGAC_23540 0.30 +0.3 4,507,002 + JDDGAC_23540 0.50 -0.2 4,507,406 - -0.6 4,507,474 + +0.2 4,507,520 - +0.5 4,507,674 + -0.5 4,507,890 + JDDGAC_23545 0.50 -1.0 4,508,105 - yqeL JDDGAC_23550 0.18 -0.3 4,508,105 - yqeL JDDGAC_23550 0.18 +0.0 4,509,068 - yqeI JDDGAC_23560 0.42 +1.7
Or see this region's nucleotide sequence