Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23205

Experiment: Bas10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas10
4,438,550	-				+0.6
4,438,558	-				-0.7
4,438,558	-				+0.5
4,438,561	-				-0.6
4,438,564	-				+0.2
4,438,564	-				+0.5
4,438,568	-				+0.9
4,438,568	-				-0.5
4,438,568	-				+0.9
4,438,568	-				+1.8
4,438,574	-				-0.4
4,438,583	-				-0.8
4,438,583	-				-1.0
4,438,731	+				+0.5
4,438,732	-				+1.0
4,438,780	+				-2.7
4,438,834	+	sdhE	JDDGAC_23195	0.23	+0.2
4,439,131	-	ygfX	JDDGAC_23200	0.27	-1.2
4,439,152	+	ygfX	JDDGAC_23200	0.33	-0.3
4,439,152	+	ygfX	JDDGAC_23200	0.33	+0.1
4,439,153	-	ygfX	JDDGAC_23200	0.33	+0.6
4,439,153	-	ygfX	JDDGAC_23200	0.33	+0.6
4,439,198	+	ygfX	JDDGAC_23200	0.44	-0.2
4,439,199	-	ygfX	JDDGAC_23200	0.44	-0.6
4,439,291	+	ygfX	JDDGAC_23200	0.67	+0.4
4,439,291	+	ygfX	JDDGAC_23200	0.67	-0.2
4,439,345	-	ygfX	JDDGAC_23200	0.80	+0.4
4,439,345	-	ygfX	JDDGAC_23200	0.80	+1.1
4,439,345	-	ygfX	JDDGAC_23200	0.80	-2.3
4,439,424	+				+0.4
4,439,443	+				+0.6
4,439,474	-				+0.7
4,439,539	+	fldB	JDDGAC_23205	0.14	-1.5
4,439,539	+	fldB	JDDGAC_23205	0.14	-1.6
4,439,751	-	fldB	JDDGAC_23205	0.55	-1.7
4,439,888	+	fldB	JDDGAC_23205	0.81	-0.2
4,439,888	+	fldB	JDDGAC_23205	0.81	+0.2
4,439,889	-	fldB	JDDGAC_23205	0.81	-0.5
4,439,892	+	fldB	JDDGAC_23205	0.82	-0.1
4,439,892	+	fldB	JDDGAC_23205	0.82	-1.2
4,439,892	+	fldB	JDDGAC_23205	0.82	-0.2
4,439,893	-	fldB	JDDGAC_23205	0.82	-0.9
4,439,893	-	fldB	JDDGAC_23205	0.82	-2.2
4,439,893	-	fldB	JDDGAC_23205	0.82	-1.0
4,439,893	-	fldB	JDDGAC_23205	0.82	-3.1
4,439,893	-	fldB	JDDGAC_23205	0.82	-1.1
4,439,893	-	fldB	JDDGAC_23205	0.82	-2.5
4,439,893	-	fldB	JDDGAC_23205	0.82	-0.8
4,439,918	+	fldB	JDDGAC_23205	0.87	-0.2
4,439,950	+				-2.1
4,439,950	+				+0.4
4,439,992	+				-1.3
4,439,992	+				-1.4
4,439,993	-				-1.8
4,439,993	-				-1.8
4,439,993	-				-1.7
4,439,993	-				-1.6
4,440,065	+				+0.5
4,440,066	-				-2.0
4,440,496	+	xerD	JDDGAC_23210	0.44	-1.6
4,440,859	+	xerD	JDDGAC_23210	0.85	+2.7