Strain Fitness in Escherichia coli ECRC98 around JDDGAC_10045

Experiment: Bas10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas10
1,792,756	-	bioA	JDDGAC_10040	0.29	+1.1
1,792,809	+	bioA	JDDGAC_10040	0.33	+0.2
1,792,882	-	bioA	JDDGAC_10040	0.39	-0.9
1,792,949	+	bioA	JDDGAC_10040	0.44	+0.2
1,793,047	-	bioA	JDDGAC_10040	0.52	-0.4
1,793,063	-	bioA	JDDGAC_10040	0.53	-1.0
1,793,096	+	bioA	JDDGAC_10040	0.56	-0.6
1,793,207	-	bioA	JDDGAC_10040	0.64	-0.8
1,793,586	+				-1.0
1,793,587	-				+0.8
1,793,587	-				-0.2
1,793,587	-				-0.6
1,793,588	+				+1.7
1,793,588	+				-0.1
1,793,589	-				+0.5
1,793,589	-				+1.1
1,793,589	-				+0.3
1,793,591	+				-1.0
1,793,928	+	ybhB	JDDGAC_10045	0.42	+0.2
1,793,951	+	ybhB	JDDGAC_10045	0.47	-0.1
1,794,101	+	ybhB	JDDGAC_10045	0.78	-3.2
1,794,109	-	ybhB	JDDGAC_10045	0.80	-0.8
1,794,198	+				+0.3
1,794,199	-				+0.7
1,794,202	+				+1.0
1,794,202	+				-0.6
1,794,275	-				-0.4
1,794,386	+				-0.6
1,794,426	+				-0.1
1,794,426	+				+1.8
1,794,446	+				-0.5
1,794,508	-				-1.3
1,794,549	-				+0.5
1,794,686	+				-2.1
1,794,686	+				+0.6
1,794,687	-				+0.1
1,794,687	-				+0.4
1,794,687	-				-2.4
1,794,688	+				+0.6
1,794,689	-				-1.0
1,794,691	-				-1.7
1,794,691	-				+0.1
1,794,713	-				+0.5
1,794,713	-				-0.3
1,794,732	+				-0.1
1,794,758	+				+0.7
1,794,759	-				-1.2
1,794,773	+				-1.0
1,794,774	-				+0.0
1,794,907	+	nleD	JDDGAC_10050	0.28	+0.6
1,794,958	-	nleD	JDDGAC_10050	0.35	-0.0
1,795,020	-	nleD	JDDGAC_10050	0.44	-2.0
1,795,101	+	nleD	JDDGAC_10050	0.56	-0.0
1,795,101	+	nleD	JDDGAC_10050	0.56	+2.3
1,795,102	-	nleD	JDDGAC_10050	0.56	+1.1
1,795,109	+	nleD	JDDGAC_10050	0.57	+0.2
1,795,109	+	nleD	JDDGAC_10050	0.57	-1.8
1,795,110	-	nleD	JDDGAC_10050	0.57	+0.2
1,795,110	-	nleD	JDDGAC_10050	0.57	-0.4
1,795,110	-	nleD	JDDGAC_10050	0.57	+1.0
1,795,125	+	nleD	JDDGAC_10050	0.59	-0.2
1,795,125	+	nleD	JDDGAC_10050	0.59	-0.4
1,795,146	+	nleD	JDDGAC_10050	0.62	-0.2