Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08905

Experiment: Bas10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas10
1,557,940	+	ycbX	JDDGAC_08895	0.78	-1.3
1,557,944	+	ycbX	JDDGAC_08895	0.79	+0.3
1,558,004	-	ycbX	JDDGAC_08895	0.84	+0.9
1,558,140	-				+0.6
1,558,163	+				+0.8
1,558,244	-	zapC	JDDGAC_08900	0.13	+0.2
1,558,508	-	zapC	JDDGAC_08900	0.61	-0.9
1,558,632	-	zapC	JDDGAC_08900	0.84	-1.4
1,558,661	-	zapC	JDDGAC_08900	0.90	+0.3
1,558,683	+				-0.4
1,558,709	-				+0.0
1,558,789	-				-0.6
1,558,868	+				-1.0
1,558,893	-				+0.0
1,559,104	+	pyrD	JDDGAC_08905	0.21	-0.1
1,559,164	-	pyrD	JDDGAC_08905	0.27	+0.2
1,559,270	+	pyrD	JDDGAC_08905	0.37	-0.9
1,559,271	-	pyrD	JDDGAC_08905	0.38	-1.9
1,559,507	+	pyrD	JDDGAC_08905	0.61	-1.4
1,559,530	+	pyrD	JDDGAC_08905	0.63	-0.4
1,559,590	+	pyrD	JDDGAC_08905	0.69	+0.4
1,559,620	-	pyrD	JDDGAC_08905	0.72	-3.2
1,559,824	+				+1.4
1,559,894	+				+0.9
1,559,895	-				+0.6
1,559,895	-				-0.1
1,559,940	-				-0.7
1,559,942	+				+0.2
1,559,942	+				+0.1
1,559,942	+				-0.1
1,560,090	+				+1.5
1,560,091	-				-0.1
1,560,146	+				-0.7
1,560,147	-				+1.3
1,560,158	+				+0.7
1,560,166	-				-0.2
1,560,166	-				-0.0
1,560,185	+				-1.5
1,560,190	+				-1.0
1,560,191	-				-0.6
1,560,191	-				+0.6
1,560,193	+				-1.5
1,560,217	-				+0.7
1,560,253	+		JDDGAC_08910	0.14	-0.5
1,560,302	-		JDDGAC_08910	0.24	-1.3
1,560,371	+		JDDGAC_08910	0.37	+0.9
1,560,372	-		JDDGAC_08910	0.37	-0.2
1,560,464	-		JDDGAC_08910	0.55	+0.3
1,560,483	-		JDDGAC_08910	0.58	-0.9
1,560,551	-		JDDGAC_08910	0.71	-0.9
1,560,574	+		JDDGAC_08910	0.76	-0.3
1,560,574	+		JDDGAC_08910	0.76	+1.0
1,560,575	-		JDDGAC_08910	0.76	-0.6
1,560,575	-		JDDGAC_08910	0.76	+0.1
1,560,575	-		JDDGAC_08910	0.76	-0.4
1,560,582	-		JDDGAC_08910	0.77	-0.7
1,560,586	+		JDDGAC_08910	0.78	-2.3
1,560,587	-		JDDGAC_08910	0.78	-0.6
1,560,712	+				+0.4
1,560,716	-				-0.3
1,560,722	-				+1.1
1,560,730	-				+2.1
1,560,730	-				+1.9
1,560,797	-	fimA	JDDGAC_08915	0.15	-1.7
1,560,822	-	fimA	JDDGAC_08915	0.19	-0.8
1,560,825	+	fimA	JDDGAC_08915	0.20	-1.3
1,560,826	-	fimA	JDDGAC_08915	0.20	+1.0
1,560,826	-	fimA	JDDGAC_08915	0.20	+1.2