Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt helD and yccF are separated by 122 nucleotides yccF and yccS are separated by 9 nucleotides
JDDGAC_08820: helD - DNA helicase IV, at 1,538,144 to 1,540,198
helD
JDDGAC_08825: yccF - YccF domain-containing protein, at 1,540,321 to 1,540,767
yccF
JDDGAC_08830: yccS - Inner membrane protein YccS, at 1,540,777 to 1,542,939
yccS
Position (kb) 1540
1541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1539.352 kb on + strand, within helD at 1539.355 kb on + strand, within helD at 1539.356 kb on - strand, within helD at 1539.401 kb on - strand, within helD at 1539.669 kb on + strand, within helD at 1539.728 kb on - strand, within helD at 1539.848 kb on - strand, within helD at 1540.207 kb on - strand at 1540.237 kb on + strand at 1540.307 kb on + strand at 1540.321 kb on - strand at 1540.321 kb on - strand at 1540.321 kb on - strand at 1540.404 kb on + strand, within yccF at 1540.455 kb on + strand, within yccF at 1540.536 kb on + strand, within yccF at 1540.537 kb on - strand, within yccF at 1540.666 kb on - strand, within yccF at 1540.776 kb on + strand at 1540.785 kb on + strand at 1540.785 kb on + strand at 1540.785 kb on + strand at 1540.786 kb on - strand at 1540.790 kb on + strand at 1540.790 kb on + strand at 1540.790 kb on + strand at 1540.791 kb on - strand at 1540.791 kb on - strand at 1540.791 kb on - strand at 1541.028 kb on - strand, within yccS at 1541.158 kb on + strand, within yccS at 1541.158 kb on + strand, within yccS at 1541.158 kb on + strand, within yccS at 1541.163 kb on + strand, within yccS at 1541.163 kb on + strand, within yccS at 1541.163 kb on + strand, within yccS at 1541.164 kb on - strand, within yccS at 1541.182 kb on + strand, within yccS at 1541.209 kb on + strand, within yccS at 1541.209 kb on + strand, within yccS at 1541.250 kb on + strand, within yccS at 1541.305 kb on + strand, within yccS at 1541.305 kb on + strand, within yccS at 1541.305 kb on + strand, within yccS at 1541.387 kb on - strand, within yccS at 1541.459 kb on + strand, within yccS at 1541.460 kb on - strand, within yccS at 1541.460 kb on - strand, within yccS at 1541.460 kb on - strand, within yccS at 1541.504 kb on - strand, within yccS at 1541.507 kb on - strand, within yccS at 1541.524 kb on - strand, within yccS at 1541.677 kb on + strand, within yccS at 1541.715 kb on + strand, within yccS at 1541.715 kb on + strand, within yccS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 1,539,352 + helD JDDGAC_08820 0.59 -0.2 1,539,355 + helD JDDGAC_08820 0.59 -0.6 1,539,356 - helD JDDGAC_08820 0.59 +0.6 1,539,401 - helD JDDGAC_08820 0.61 -1.2 1,539,669 + helD JDDGAC_08820 0.74 -1.4 1,539,728 - helD JDDGAC_08820 0.77 -0.1 1,539,848 - helD JDDGAC_08820 0.83 -1.6 1,540,207 - -0.4 1,540,237 + -1.0 1,540,307 + -0.6 1,540,321 - -0.1 1,540,321 - +0.5 1,540,321 - +0.5 1,540,404 + yccF JDDGAC_08825 0.19 -2.0 1,540,455 + yccF JDDGAC_08825 0.30 +0.1 1,540,536 + yccF JDDGAC_08825 0.48 -1.6 1,540,537 - yccF JDDGAC_08825 0.48 -0.5 1,540,666 - yccF JDDGAC_08825 0.77 -0.1 1,540,776 + -0.9 1,540,785 + +2.2 1,540,785 + -0.0 1,540,785 + -0.2 1,540,786 - -0.2 1,540,790 + -0.4 1,540,790 + +0.5 1,540,790 + -2.5 1,540,791 - +0.3 1,540,791 - +1.5 1,540,791 - +1.5 1,541,028 - yccS JDDGAC_08830 0.12 +0.6 1,541,158 + yccS JDDGAC_08830 0.18 +0.2 1,541,158 + yccS JDDGAC_08830 0.18 +1.7 1,541,158 + yccS JDDGAC_08830 0.18 +1.3 1,541,163 + yccS JDDGAC_08830 0.18 -0.2 1,541,163 + yccS JDDGAC_08830 0.18 -1.2 1,541,163 + yccS JDDGAC_08830 0.18 -1.5 1,541,164 - yccS JDDGAC_08830 0.18 -0.6 1,541,182 + yccS JDDGAC_08830 0.19 -1.9 1,541,209 + yccS JDDGAC_08830 0.20 -0.1 1,541,209 + yccS JDDGAC_08830 0.20 -0.0 1,541,250 + yccS JDDGAC_08830 0.22 +0.2 1,541,305 + yccS JDDGAC_08830 0.24 -0.6 1,541,305 + yccS JDDGAC_08830 0.24 +0.7 1,541,305 + yccS JDDGAC_08830 0.24 -0.4 1,541,387 - yccS JDDGAC_08830 0.28 -1.8 1,541,459 + yccS JDDGAC_08830 0.32 -0.0 1,541,460 - yccS JDDGAC_08830 0.32 -1.3 1,541,460 - yccS JDDGAC_08830 0.32 +0.6 1,541,460 - yccS JDDGAC_08830 0.32 +1.3 1,541,504 - yccS JDDGAC_08830 0.34 -0.2 1,541,507 - yccS JDDGAC_08830 0.34 -0.7 1,541,524 - yccS JDDGAC_08830 0.35 -0.1 1,541,677 + yccS JDDGAC_08830 0.42 +0.6 1,541,715 + yccS JDDGAC_08830 0.43 -0.2 1,541,715 + yccS JDDGAC_08830 0.43 -0.6
Or see this region's nucleotide sequence