Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiL and JDDGAC_08650 are separated by 151 nucleotides JDDGAC_08650 and JDDGAC_08655 overlap by 11 nucleotides JDDGAC_08655 and JDDGAC_08660 are separated by 12 nucleotides
JDDGAC_08645: ydiL - CPBP family intramembrane metalloprotease, at 1,516,085 to 1,516,903
ydiL
JDDGAC_08650: JDDGAC_08650 - antitermination protein, at 1,517,055 to 1,517,426
_08650
JDDGAC_08655: JDDGAC_08655 - Endodeoxyribonuclease RusA, at 1,517,416 to 1,517,787
_08655
JDDGAC_08660: JDDGAC_08660 - DUF968 domain-containing protein, at 1,517,800 to 1,518,849
_08660
Position (kb)
1517
1518 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1516.425 kb on - strand, within ydiL at 1517.048 kb on + strand at 1517.070 kb on - strand at 1517.159 kb on + strand, within JDDGAC_08650 at 1517.196 kb on + strand, within JDDGAC_08650 at 1517.197 kb on - strand, within JDDGAC_08650 at 1517.201 kb on - strand, within JDDGAC_08650 at 1517.201 kb on - strand, within JDDGAC_08650 at 1517.204 kb on - strand, within JDDGAC_08650 at 1517.294 kb on + strand, within JDDGAC_08650 at 1517.294 kb on + strand, within JDDGAC_08650 at 1517.358 kb on + strand, within JDDGAC_08650 at 1517.373 kb on - strand, within JDDGAC_08650 at 1517.596 kb on - strand, within JDDGAC_08655 at 1517.614 kb on - strand, within JDDGAC_08655 at 1517.645 kb on - strand, within JDDGAC_08655 at 1518.529 kb on + strand, within JDDGAC_08660 at 1518.530 kb on - strand, within JDDGAC_08660 at 1518.530 kb on - strand, within JDDGAC_08660 at 1518.551 kb on + strand, within JDDGAC_08660
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 1,516,425 - ydiL JDDGAC_08645 0.42 -0.8 1,517,048 + -0.1 1,517,070 - -0.4 1,517,159 + JDDGAC_08650 0.28 -0.3 1,517,196 + JDDGAC_08650 0.38 -1.2 1,517,197 - JDDGAC_08650 0.38 -0.1 1,517,201 - JDDGAC_08650 0.39 -1.6 1,517,201 - JDDGAC_08650 0.39 -1.4 1,517,204 - JDDGAC_08650 0.40 +0.1 1,517,294 + JDDGAC_08650 0.64 -1.2 1,517,294 + JDDGAC_08650 0.64 -2.9 1,517,358 + JDDGAC_08650 0.81 +1.5 1,517,373 - JDDGAC_08650 0.85 +0.9 1,517,596 - JDDGAC_08655 0.48 -0.6 1,517,614 - JDDGAC_08655 0.53 -0.3 1,517,645 - JDDGAC_08655 0.62 -2.7 1,518,529 + JDDGAC_08660 0.69 +0.4 1,518,530 - JDDGAC_08660 0.70 -0.0 1,518,530 - JDDGAC_08660 0.70 -0.3 1,518,551 + JDDGAC_08660 0.72 -0.3
Or see this region's nucleotide sequence