Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08655

Experiment: Bas10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiL and JDDGAC_08650 are separated by 151 nucleotidesJDDGAC_08650 and JDDGAC_08655 overlap by 11 nucleotidesJDDGAC_08655 and JDDGAC_08660 are separated by 12 nucleotides JDDGAC_08645: ydiL - CPBP family intramembrane metalloprotease, at 1,516,085 to 1,516,903 ydiL JDDGAC_08650: JDDGAC_08650 - antitermination protein, at 1,517,055 to 1,517,426 _08650 JDDGAC_08655: JDDGAC_08655 - Endodeoxyribonuclease RusA, at 1,517,416 to 1,517,787 _08655 JDDGAC_08660: JDDGAC_08660 - DUF968 domain-containing protein, at 1,517,800 to 1,518,849 _08660 Position (kb) 1517 1518Strain fitness (log2 ratio) -3 -2 -1 0 1at 1516.425 kb on - strand, within ydiLat 1517.048 kb on + strandat 1517.070 kb on - strandat 1517.159 kb on + strand, within JDDGAC_08650at 1517.196 kb on + strand, within JDDGAC_08650at 1517.197 kb on - strand, within JDDGAC_08650at 1517.201 kb on - strand, within JDDGAC_08650at 1517.201 kb on - strand, within JDDGAC_08650at 1517.204 kb on - strand, within JDDGAC_08650at 1517.294 kb on + strand, within JDDGAC_08650at 1517.294 kb on + strand, within JDDGAC_08650at 1517.358 kb on + strand, within JDDGAC_08650at 1517.373 kb on - strand, within JDDGAC_08650at 1517.596 kb on - strand, within JDDGAC_08655at 1517.614 kb on - strand, within JDDGAC_08655at 1517.645 kb on - strand, within JDDGAC_08655at 1518.529 kb on + strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.551 kb on + strand, within JDDGAC_08660

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas10
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1,516,425 - ydiL JDDGAC_08645 0.42 -0.8
1,517,048 + -0.1
1,517,070 - -0.4
1,517,159 + JDDGAC_08650 0.28 -0.3
1,517,196 + JDDGAC_08650 0.38 -1.2
1,517,197 - JDDGAC_08650 0.38 -0.1
1,517,201 - JDDGAC_08650 0.39 -1.6
1,517,201 - JDDGAC_08650 0.39 -1.4
1,517,204 - JDDGAC_08650 0.40 +0.1
1,517,294 + JDDGAC_08650 0.64 -1.2
1,517,294 + JDDGAC_08650 0.64 -2.9
1,517,358 + JDDGAC_08650 0.81 +1.5
1,517,373 - JDDGAC_08650 0.85 +0.9
1,517,596 - JDDGAC_08655 0.48 -0.6
1,517,614 - JDDGAC_08655 0.53 -0.3
1,517,645 - JDDGAC_08655 0.62 -2.7
1,518,529 + JDDGAC_08660 0.69 +0.4
1,518,530 - JDDGAC_08660 0.70 -0.0
1,518,530 - JDDGAC_08660 0.70 -0.3
1,518,551 + JDDGAC_08660 0.72 -0.3

Or see this region's nucleotide sequence