Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides yceI and trhO are separated by 41 nucleotides
JDDGAC_07405: solA - N-methyl-L-tryptophan oxidase, at 1,285,194 to 1,286,312
solA
JDDGAC_07410: yceO - Uncharacterized protein YceO, at 1,286,360 to 1,286,473
yceO
JDDGAC_07415: yceJ - Cytochrome b561-like protein, at 1,286,734 to 1,287,300
yceJ
JDDGAC_07420: yceI - YceI family protein, at 1,287,304 to 1,287,879
yceI
JDDGAC_07425: trhO - rhodanese-related sulfurtransferase, at 1,287,921 to 1,288,973
trhO
Position (kb) 1286
1287
1288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1285.738 kb on + strand, within solA at 1285.742 kb on + strand, within solA at 1285.743 kb on - strand, within solA at 1285.765 kb on - strand, within solA at 1285.804 kb on + strand, within solA at 1285.844 kb on + strand, within solA at 1285.844 kb on + strand, within solA at 1285.845 kb on - strand, within solA at 1286.177 kb on + strand, within solA at 1286.310 kb on + strand at 1286.379 kb on - strand, within yceO at 1286.733 kb on + strand at 1286.733 kb on + strand at 1286.733 kb on + strand at 1286.734 kb on - strand at 1286.734 kb on - strand at 1286.771 kb on + strand at 1286.802 kb on + strand, within yceJ at 1286.825 kb on + strand, within yceJ at 1286.851 kb on + strand, within yceJ at 1287.025 kb on + strand, within yceJ at 1287.029 kb on + strand, within yceJ at 1287.029 kb on + strand, within yceJ at 1287.191 kb on + strand, within yceJ at 1287.194 kb on + strand, within yceJ at 1287.195 kb on - strand, within yceJ at 1287.326 kb on + strand at 1287.437 kb on - strand, within yceI at 1287.447 kb on - strand, within yceI at 1287.447 kb on - strand, within yceI at 1287.549 kb on + strand, within yceI at 1287.664 kb on - strand, within yceI at 1287.753 kb on + strand, within yceI at 1287.918 kb on + strand at 1287.919 kb on - strand at 1287.919 kb on - strand at 1287.923 kb on - strand at 1287.975 kb on - strand at 1287.975 kb on - strand at 1287.975 kb on - strand at 1287.987 kb on - strand at 1288.198 kb on - strand, within trhO at 1288.198 kb on - strand, within trhO at 1288.200 kb on - strand, within trhO at 1288.200 kb on - strand, within trhO at 1288.200 kb on - strand, within trhO at 1288.200 kb on - strand, within trhO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 1,285,738 + solA JDDGAC_07405 0.49 -0.1 1,285,742 + solA JDDGAC_07405 0.49 -0.2 1,285,743 - solA JDDGAC_07405 0.49 +1.1 1,285,765 - solA JDDGAC_07405 0.51 -1.1 1,285,804 + solA JDDGAC_07405 0.55 -1.0 1,285,844 + solA JDDGAC_07405 0.58 -0.7 1,285,844 + solA JDDGAC_07405 0.58 +0.0 1,285,845 - solA JDDGAC_07405 0.58 +0.0 1,286,177 + solA JDDGAC_07405 0.88 +0.1 1,286,310 + +0.4 1,286,379 - yceO JDDGAC_07410 0.17 -0.4 1,286,733 + +0.1 1,286,733 + +0.6 1,286,733 + -0.4 1,286,734 - +0.1 1,286,734 - +1.1 1,286,771 + +1.2 1,286,802 + yceJ JDDGAC_07415 0.12 -0.1 1,286,825 + yceJ JDDGAC_07415 0.16 -2.2 1,286,851 + yceJ JDDGAC_07415 0.21 -2.0 1,287,025 + yceJ JDDGAC_07415 0.51 +0.5 1,287,029 + yceJ JDDGAC_07415 0.52 +2.6 1,287,029 + yceJ JDDGAC_07415 0.52 -0.2 1,287,191 + yceJ JDDGAC_07415 0.81 +0.3 1,287,194 + yceJ JDDGAC_07415 0.81 -1.5 1,287,195 - yceJ JDDGAC_07415 0.81 -0.9 1,287,326 + +0.1 1,287,437 - yceI JDDGAC_07420 0.23 -0.1 1,287,447 - yceI JDDGAC_07420 0.25 -0.4 1,287,447 - yceI JDDGAC_07420 0.25 +0.9 1,287,549 + yceI JDDGAC_07420 0.43 -0.1 1,287,664 - yceI JDDGAC_07420 0.62 +1.2 1,287,753 + yceI JDDGAC_07420 0.78 +1.6 1,287,918 + -0.1 1,287,919 - -0.9 1,287,919 - -2.4 1,287,923 - +0.5 1,287,975 - +0.2 1,287,975 - -1.9 1,287,975 - -0.0 1,287,987 - -0.2 1,288,198 - trhO JDDGAC_07425 0.26 -1.8 1,288,198 - trhO JDDGAC_07425 0.26 +0.8 1,288,200 - trhO JDDGAC_07425 0.26 -0.6 1,288,200 - trhO JDDGAC_07425 0.26 -0.6 1,288,200 - trhO JDDGAC_07425 0.26 +0.9 1,288,200 - trhO JDDGAC_07425 0.26 -0.3
Or see this region's nucleotide sequence